XLOC_006086 (ptpn20)


Basic Information

Item Value
gene id XLOC_006086
gene name ptpn20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31205439 ~ 31228552 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012007
GGTATGGCAGCAAAGGAGAGGGGCATTTtTAAAGCAGTCGCTGACAGTGCCATGCTGTTCAGGAAGAGGCTGTCGGTCACAGCGGAGCAGGAGAGCTGTATCCTGCAGGTGGAGTTCACCAAGCCTGATCGTGGTGGGCTGGGCTTTGCACTGGTGGGCGGAGTCAACGGCAGCACACTGAGAGTGAAGGACATATGCTGTGGGGGCGTGGCTGAGCAGGACGGTCGTCTTCGAGTGGGTGACATCCTTCTGGAGgttaaTGGCATCATTGTATCAGGACTGAGCCATAGTAAAGTTGTGGATATTTTGAGGAAGGCGGAGGGCACGGTTCAGCTGACGGTGTGTAGGGACATCCTGCCCATGTCCGCCTGCTCTGCTTCCAACTACCCCACTGAGGCCCATGGGAATTTCAACACACTGAATTCTGCAGCACAAACTGAAGCACATCCAGATCACGTGTCTTTCCACTCAGACTGTCCTGAATGTGAGCAGGAAAGTCGAAACTGTACACCTACCTGTCAGAGGTGTTGTCCGTCTCTGGGAGTCACAGACATGCTACAAGAAAAGACAGACCCCCAGAAGCAGCATCTAGAAAATTCTGCCATGAAAACAGAGCACAGCCAGTCGGACGGCTGGAGCAGTGACGAGGAAGAAGATGGTGACGATGACGACTGTGCTTCCCAGCCTTCGCCTCCAGAGACTATACCTCTGACAGGTCGGCCAATCGTGTCAGAAGAGGAGCTTTCCAGTCTTGCAGTGATTTCTCCTCCTAAGAATGGGCAGTACACCGGCTCCAGGGTCAAAGCCCTCATCCAGGCCCTCGAGCAGCTAGAAAAGCAAGATCTGGTCAAAGAGTTTATGGCTTTGGAGCATTTAAACCCTTCAGACAACTGCCTGGTTGGAAAAGCACCTGAAAACCGGGAAAAGAACAGATACAGGGAAATCCTGCCTTACGATAAGACGCGTGTTCCTGTGGGAGAGGACGAGGGCTACATCAATGCCAGCTACATTCGTATGAAGGTGGGCTCGGAGGAGCTGTTCTTCATCTCCGCTCAGGGCCCTTTGCCTGGCACTCAGGACAGTTTCTGGCAGATGGTGTGGGAGAACAGGTCTGATGT
>TCONS_00012008
ttaaactgaaaaaaaacgaCACACGTGGCTCTTGTTAAAAACCGAGATATTTAGTTTTGAGGTTTTCATCGTCCCCTTCTGAGATGATGCTTCTTTTCTTACAGCACAAACTGAAGCACATCCAGATCACGTGTCTTTCCACTCAGACTGTCCTGAATGTGAGCAGGAAAGTCGAAACTGTACACCTACCTGTCAGAGGTGTTGTCCGTCTCTGGGAGTCACAGACATGCTACAAGAAAAGACAGACCCCCAGAAGCAGCATCTAGAAAATTCTGCCATGAAAACAGAGCACAGCCAGTCGGACGGCTGGAGCAGTGACGAGGAAGAAGATGGTGACGATGACGACTGTGCTTCCCAGCCTTCGCCTCCAGAGACTATACCTCTGACAGGTCGGCCAATCGTGTCAGAAGAGGAGCTTTCCAGTCTTGCAGTGATTTCTCCTCCTAAGAATGGGCAGTACACCGGCTCCAGGGTCAAAGCCCTCATCCAGGCCCTCGAGCAGCTAGAAAAGCAAGATCTGGTCAAAGAGTTTATGGCTTTGGAGCATTTAAACCCTTCAGACAACTGCCTGGTTGGAAAAGCACCTGAAAACCGGGAAAAGAACAGATACAGGGAAATCCTGCCTTACGATAAGACGCGTGTTCCTGTGGGAGAGGACGAGGGCTACATCAATGCCAGCTACATTCGTATGAAGGTGGGCTCGGAGGAGCTGTTCTTCATCTCCGCTCAGGGCCCTTTGCCTGGCACTCAGGACAGTTTCTGGCAGATGGTGTGGGAGAACAGGTCTGATGTGATCGCCATGATGACTCGAGAGGTGGAGCGCGGACGGGTCAAATGCCACAAATACTGGCCCGAGAAGCTCGACGTCCCCAAAGAGACCAGCCGTTACCAGCTCTTCCTGGACAACTACCAGATGCTTGGTTATTTCCACATTAAGGTCATCAAGATGGTGGAAAAAAAGAGTGGAGACGTGCACTTTGTGAAGCACCTGAAGTTCACCACATGGCCTGATCACGGCACACCCCACTCCTCCGATCAGCTTGTGCGCTTCATCCGCTACATGAGGGCTGTTCACGCTAAAGGGCCCATCACCGTCCACTGCAGCGCAGGCATCGGCCGAGCCGGAGTCCTCATCTGTACAGACGTCATCCTCAGTCTCATTCAGAAAGACCTCAGTGTGAGTCATTTACACTACAGCAGCATAATCAATCTGTAA

Function

symbol description
ptpn20 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-090313-90 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000075459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012007 False 1118 mRNA 0.53 10 31205439 31226360
TCONS_00012008 True 1216 mRNA 0.51 7 31211050 31228552

Neighbor

gene id symbol gene type direction distance location
XLOC_006085 ptpn20 coding upstream 8848 31192503 ~ 31196591 (+)
XLOC_006079 CR931802.4 coding upstream 13625 31144305 ~ 31191814 (+)
XLOC_006084 ptpn20 coding upstream 19656 31184796 ~ 31185783 (+)
XLOC_006083 ptpn20 coding upstream 22895 31182103 ~ 31182544 (+)
XLOC_006082 ptpn20 coding upstream 24429 31180084 ~ 31181010 (+)
XLOC_006087 gdf10a coding downstream 57108 31285660 ~ 31289625 (+)
XLOC_006088 antxr1d coding downstream 68464 31297016 ~ 31335750 (+)
XLOC_006089 METTL18 coding downstream 161761 31390313 ~ 31392869 (+)
XLOC_006090 tdrd9 coding downstream 173515 31402067 ~ 31423346 (+)
XLOC_006091 lrrc9 coding downstream 244638 31473190 ~ 31479801 (+)
XLOC_006074 NA non-coding upstream 276778 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 368663 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 527796 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 693716 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 953582 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 577968 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 726668 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 876713 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1163831 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1617941 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_08745512_08773403 PTPN20 coding CI01000012 null 8745227 ~ 8773403 (-)