Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_006082 |
| gene name | ptpn20 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 31180084 ~ 31181010 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ptpn20 | Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus. |
| id | name | namespace |
|---|---|---|
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0036312 | phosphatidylinositol 3-kinase regulatory subunit binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016791 | phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-090313-90 | Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus. |
| ensembl_id | ENSDARG00000075459 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00012003 | True | 615 | mRNA | 0.46 | 4 | 31180084 | 31181010 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_006081 | ptpn20 | coding | upstream | 1548 | 31177934 ~ 31178536 (+) |
| XLOC_006080 | CR931802.3 | coding | upstream | 4930 | 31172833 ~ 31175154 (+) |
| XLOC_006078 | arhgap22 | coding | upstream | 40318 | 31108334 ~ 31139766 (+) |
| XLOC_006077 | si:ch211-223a10.1 | coding | upstream | 90044 | 31070181 ~ 31090040 (+) |
| XLOC_006076 | lrrc18a | coding | upstream | 174195 | 31002658 ~ 31005889 (+) |
| XLOC_006083 | ptpn20 | coding | downstream | 1093 | 31182103 ~ 31182544 (+) |
| XLOC_006084 | ptpn20 | coding | downstream | 3786 | 31184796 ~ 31185783 (+) |
| XLOC_006085 | ptpn20 | coding | downstream | 11493 | 31192503 ~ 31196591 (+) |
| XLOC_006086 | ptpn20 | coding | downstream | 24429 | 31205439 ~ 31228552 (+) |
| XLOC_006087 | gdf10a | coding | downstream | 104650 | 31285660 ~ 31289625 (+) |
| XLOC_006074 | NA | non-coding | upstream | 251423 | 30920554 ~ 30928661 (+) |
| XLOC_006071 | CR762493.1 | non-coding | upstream | 343308 | 30836656 ~ 30836776 (+) |
| XLOC_006067 | NA | non-coding | upstream | 502441 | 30676825 ~ 30677643 (+) |
| XLOC_006065 | AL844152.1 | non-coding | upstream | 668361 | 30511607 ~ 30511723 (+) |
| XLOC_006063 | AL929330.1 | non-coding | upstream | 928227 | 30251741 ~ 30251857 (+) |
| XLOC_006101 | NA | non-coding | downstream | 625510 | 31806520 ~ 31850508 (+) |
| XLOC_006102 | NA | non-coding | downstream | 774210 | 31955220 ~ 31978484 (+) |
| XLOC_006103 | NA | non-coding | downstream | 924255 | 32105265 ~ 32108472 (+) |
| XLOC_006105 | CR769766.1 | non-coding | downstream | 1211373 | 32392383 ~ 32392499 (+) |
| XLOC_006111 | CR936241.1 | non-coding | downstream | 1665483 | 32846493 ~ 32846609 (+) |
