XLOC_006083 (ptpn20)


Basic Information

Item Value
gene id XLOC_006083
gene name ptpn20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31182103 ~ 31182544 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012004
CCCAGAGAGAGAAATCATCTGTGTCACTTTAAAGAAGGATCCCAAACTTGGCTATGGTTTCATAATAGTCGGGGAGGACAACACAGGGAAGTTAGATCTTGGAATTTTTATTGCATCCATCATTCCCGATGGTCCAGCTGATAAGGATGGGAGAATTAGACCAGgtGGTCGGCTGATCTCTCTGAATAACATCAGTCTAGAAGGGGTGACTTTTAATATAGCAGCTTCCATACTCCAGAACAGCCCAGAAGAAGTGGAGCTTATAGTGTCTCAACCCAAA

Function

symbol description
ptpn20 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-090313-90 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDARG00000075459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012004 True 280 mRNA 0.44 3 31182103 31182544

Neighbor

gene id symbol gene type direction distance location
XLOC_006082 ptpn20 coding upstream 1093 31180084 ~ 31181010 (+)
XLOC_006081 ptpn20 coding upstream 3567 31177934 ~ 31178536 (+)
XLOC_006080 CR931802.3 coding upstream 6949 31172833 ~ 31175154 (+)
XLOC_006078 arhgap22 coding upstream 42337 31108334 ~ 31139766 (+)
XLOC_006077 si:ch211-223a10.1 coding upstream 92063 31070181 ~ 31090040 (+)
XLOC_006084 ptpn20 coding downstream 2252 31184796 ~ 31185783 (+)
XLOC_006085 ptpn20 coding downstream 9959 31192503 ~ 31196591 (+)
XLOC_006086 ptpn20 coding downstream 22895 31205439 ~ 31228552 (+)
XLOC_006087 gdf10a coding downstream 103116 31285660 ~ 31289625 (+)
XLOC_006088 antxr1d coding downstream 114472 31297016 ~ 31335750 (+)
XLOC_006074 NA non-coding upstream 253442 30920554 ~ 30928661 (+)
XLOC_006071 CR762493.1 non-coding upstream 345327 30836656 ~ 30836776 (+)
XLOC_006067 NA non-coding upstream 504460 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 670380 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 930246 30251741 ~ 30251857 (+)
XLOC_006101 NA non-coding downstream 623976 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 772676 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 922721 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1209839 32392383 ~ 32392499 (+)
XLOC_006111 CR936241.1 non-coding downstream 1663949 32846493 ~ 32846609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003034 NA coding CM030139.1 CM030139.1 10098459 ~ 10128943 (+)