RNA id: TCONS_00012008


Basic Information

Item Value
RNA id TCONS_00012008
length 1216
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_006086
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31205439 ~ 31228552 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaactgaaaaaaaacgaCACACGTGGCTCTTGTTAAAAACCGAGATATTTAGTTTTGAGGTTTTCATCGTCCCCTTCTGAGATGATGCTTCTTTTCTTACAGCACAAACTGAAGCACATCCAGATCACGTGTCTTTCCACTCAGACTGTCCTGAATGTGAGCAGGAAAGTCGAAACTGTACACCTACCTGTCAGAGGTGTTGTCCGTCTCTGGGAGTCACAGACATGCTACAAGAAAAGACAGACCCCCAGAAGCAGCATCTAGAAAATTCTGCCATGAAAACAGAGCACAGCCAGTCGGACGGCTGGAGCAGTGACGAGGAAGAAGATGGTGACGATGACGACTGTGCTTCCCAGCCTTCGCCTCCAGAGACTATACCTCTGACAGGTCGGCCAATCGTGTCAGAAGAGGAGCTTTCCAGTCTTGCAGTGATTTCTCCTCCTAAGAATGGGCAGTACACCGGCTCCAGGGTCAAAGCCCTCATCCAGGCCCTCGAGCAGCTAGAAAAGCAAGATCTGGTCAAAGAGTTTATGGCTTTGGAGCATTTAAACCCTTCAGACAACTGCCTGGTTGGAAAAGCACCTGAAAACCGGGAAAAGAACAGATACAGGGAAATCCTGCCTTACGATAAGACGCGTGTTCCTGTGGGAGAGGACGAGGGCTACATCAATGCCAGCTACATTCGTATGAAGGTGGGCTCGGAGGAGCTGTTCTTCATCTCCGCTCAGGGCCCTTTGCCTGGCACTCAGGACAGTTTCTGGCAGATGGTGTGGGAGAACAGGTCTGATGTGATCGCCATGATGACTCGAGAGGTGGAGCGCGGACGGGTCAAATGCCACAAATACTGGCCCGAGAAGCTCGACGTCCCCAAAGAGACCAGCCGTTACCAGCTCTTCCTGGACAACTACCAGATGCTTGGTTATTTCCACATTAAGGTCATCAAGATGGTGGAAAAAAAGAGTGGAGACGTGCACTTTGTGAAGCACCTGAAGTTCACCACATGGCCTGATCACGGCACACCCCACTCCTCCGATCAGCTTGTGCGCTTCATCCGCTACATGAGGGCTGTTCACGCTAAAGGGCCCATCACCGTCCACTGCAGCGCAGGCATCGGCCGAGCCGGAGTCCTCATCTGTACAGACGTCATCCTCAGTCTCATTCAGAAAGACCTCAGTGTGAGTCATTTACACTACAGCAGCATAATCAATCTGTAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-090313-90 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDART00000111705

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011994 lncRNA upstream 256012 30951267 ~ 30955038 (+) True XLOC_006075
TCONS_00013627 lncRNA upstream 282389 30920554 ~ 30928661 (+) True XLOC_006074
TCONS_00013626 lncRNA upstream 533407 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00011972 lncRNA upstream 977370 30228101 ~ 30233680 (+) False XLOC_006062
TCONS_00012021 lncRNA downstream 302879 31531431 ~ 31532435 (+) True XLOC_006094
TCONS_00013628 lncRNA downstream 577968 31806520 ~ 31837960 (+) False XLOC_006101
TCONS_00013629 lncRNA downstream 578229 31806781 ~ 31815664 (+) False XLOC_006101
TCONS_00013631 lncRNA downstream 578229 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00013630 lncRNA downstream 578229 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00012006 mRNA upstream 14459 31192503 ~ 31196591 (+) True XLOC_006085
TCONS_00012005 mRNA upstream 25267 31184796 ~ 31185783 (+) True XLOC_006084
TCONS_00012004 mRNA upstream 28506 31182103 ~ 31182544 (+) True XLOC_006083
TCONS_00012003 mRNA upstream 30040 31180084 ~ 31181010 (+) True XLOC_006082
TCONS_00012002 mRNA upstream 32514 31177934 ~ 31178536 (+) True XLOC_006081
TCONS_00012009 mRNA downstream 57108 31285660 ~ 31289625 (+) False XLOC_006087
TCONS_00012010 mRNA downstream 57524 31286076 ~ 31289422 (+) True XLOC_006087
TCONS_00012011 mRNA downstream 68464 31297016 ~ 31317032 (+) False XLOC_006088
TCONS_00012012 mRNA downstream 68547 31297099 ~ 31326455 (+) False XLOC_006088
TCONS_00012013 mRNA downstream 92745 31321297 ~ 31335750 (+) True XLOC_006088
TCONS_00011984 other upstream 374274 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00011978 other upstream 699327 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011975 other upstream 959193 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011948 other upstream 1425029 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011936 other upstream 1455623 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00012034 other downstream 541269 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00012037 other downstream 1163831 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012044 other downstream 1617941 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012045 other downstream 1756102 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012076 other downstream 3197696 34426248 ~ 34426365 (+) True XLOC_006133

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_08745512_08773403.mRNA True 6251 mRNA 0.48 42 CI01000012 8745227 ~ 8773403 (-)