RNA id: TCONS_00012002


Basic Information

Item Value
RNA id TCONS_00012002
length 381
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_006081
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31177934 ~ 31178536 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTGGACCTGAGTTTACCAGGATGAACGATGAGCCTCAAATCATTTTAGAGCTGCCGGGGTCTATAGTGTCGAAGAAAGGCAAGTCAGGTCTGTCTCAGAGGGAGGTTAACGTGATCATGCCAAATGAACAGTGTGTGGCAGTGAAATGTGACATCAAGTCCCGAGGGAGGGATGTGTTCGACATGGTTGTGGCACACGCTAACCTTGTGGAGCATTTTTACTTTGGCCTTGCTTTCATTGATGATGGTGAATTTTTCTTCTTGGACCCCGAGACAAAAATCTCAAAGGTTGCTCCTGATTACTGGAAGAAAGTGGCTTCTGCGACATTTACACTTTATCTTCGTGTCAGATTTTTCCCTGATGACATCTCCTACATTCT

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-090313-90 Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within bicellular tight junction assembly and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus.

Ensembl:

ensembl_id ENSDART00000144568

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011994 lncRNA upstream 222896 30951267 ~ 30955038 (+) True XLOC_006075
TCONS_00013627 lncRNA upstream 249273 30920554 ~ 30928661 (+) True XLOC_006074
TCONS_00013626 lncRNA upstream 500291 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00011972 lncRNA upstream 944254 30228101 ~ 30233680 (+) False XLOC_006062
TCONS_00012021 lncRNA downstream 352895 31531431 ~ 31532435 (+) True XLOC_006094
TCONS_00013628 lncRNA downstream 627984 31806520 ~ 31837960 (+) False XLOC_006101
TCONS_00013629 lncRNA downstream 628245 31806781 ~ 31815664 (+) False XLOC_006101
TCONS_00013631 lncRNA downstream 628245 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00013630 lncRNA downstream 628245 31806781 ~ 31850508 (+) False XLOC_006101
TCONS_00012001 mRNA upstream 2780 31172833 ~ 31175154 (+) True XLOC_006080
TCONS_00011999 mRNA upstream 38168 31133270 ~ 31139766 (+) True XLOC_006078
TCONS_00011998 mRNA upstream 44508 31108334 ~ 31133426 (+) False XLOC_006078
TCONS_00011996 mRNA upstream 87894 31070181 ~ 31090040 (+) False XLOC_006077
TCONS_00011997 mRNA upstream 92661 31070285 ~ 31085273 (+) True XLOC_006077
TCONS_00012003 mRNA downstream 1548 31180084 ~ 31181010 (+) True XLOC_006082
TCONS_00012004 mRNA downstream 3567 31182103 ~ 31182544 (+) True XLOC_006083
TCONS_00012005 mRNA downstream 6260 31184796 ~ 31185783 (+) True XLOC_006084
TCONS_00012006 mRNA downstream 13967 31192503 ~ 31196591 (+) True XLOC_006085
TCONS_00012007 mRNA downstream 26903 31205439 ~ 31226360 (+) False XLOC_006086
TCONS_00011984 other upstream 341158 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00011978 other upstream 666211 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011975 other upstream 926077 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011948 other upstream 1391913 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011936 other upstream 1422507 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00012034 other downstream 591285 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00012037 other downstream 1213847 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012044 other downstream 1667957 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012045 other downstream 1806118 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012076 other downstream 3247712 34426248 ~ 34426365 (+) True XLOC_006133

Expression Profile

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