RNA id: TCONS_00013631


Basic Information

Item Value
RNA id TCONS_00013631
length 4828
lncRNA type read_through
GC content 0.39
exon number 3
gene id XLOC_006101
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31806520 ~ 31850508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCCAGACTGCTCTTCCAGTAAACATTGTTTCCATAGTGATAATGGAGAAGAGAGGAAGAAAGTGAAAAGGTGACAGCAAGAGTAATAAGGGAGAGAATGAGTGAGAGCGAATCCAAAGAAATAAGCTGTGTGCCAGATATAATCACATCAGAAGGAGATAAGGGAACATTGCGAGCTCGGGATCATTCCTTTATTCTTAACACATTTCAcgaaaacacgcacacacattcaaacCCGAACAATGTTTAAAATTTGATTTCATTTCCTTCCAGCATTGTTGCCTCTATAAGTTCTGCTTTTATTTAAGGGTCTCCCGTTAAGTGCTtttagaaataaaacagaaatgtagAAAGTAATGCATAAACAACTCATATAAAATtaagaactgcatgaaaataaaAGCTTTGGTAGTGAATCATTTTCTAATTCGTACCAAGAATCACTTGAATTAGTGAAGCCCCTCAAGACAACAAATTAACATGGACACTGAGGTATCTTCGTCTGTGATAGAGTcactaaagatgtttttttttcttaaatatgtgAATGCATAAAATGCTAAGGGTGCTAAAGAGAACAAGattgttttaaacattatttaaagccTCATTCTGGGCCTCATGCATAACTGGTAAAAACCACTGCATGTAAATGTGATGATCGGTATGTCATGCATTTGTCAAGACAAGTGCCTATGATATTAACAAAAGTCAATTTCAGATattttatggtaacactttacaacaaggttccATTAATGTTAGTTATCAACATAGACAAACAATgaacattacagtatttattcagctTTGTTAACATAAGTtactgaaaataaagttgttcgtTGTTAGCTTTTTGTTAACTCACCGTACAATAATTAATGTTGAAAAGCACAACTATGGATTAAtgcagtaaatgttgaactatataAATGCTGAGCACATCAAATATTGCTTATTCTTATTTCACGTTAGTAAATATGTGTAGGATTCCTGTAGGACACAACTAACATTAATAGAagattattgtaaagtgtgagccAGTGTATTAttacacagttttaaaaacaGTTTCTGAATGAGTTTGGATCTCTCTTTGTCACTTTACATGGTGCCCATCGTTGTGGATTACATCAGTCACAAATATCCACAAACACTGCAAGATTATACAAGAACATTTAAGGCACAGTGTGGTCATTTTTGAGACAAGcagtatgtgaccctggaccaccaAACCAGTCTTATGTTGCGCAGGTATATTTTTGTCATTAGCCAAAGCACATTGTATAGGTCAAAATGATagatttattgatattttttatgcCAATAATCATTAGAATGTAAAATAAGGATCATGTTGCATGAAGATATTTGGTAATTGTTTTActctaaataaattattattagtaatatgcaATGCTGAGAATGTAATTTGGACatctttaaatgtgattttctcagtatttagtagGGTTGggctaaaatctaaatcttgattaattaaacattttaacttgattatgattaatgaacaattatttgattttttttgccctcatagttcactcaCAGGTTTTATTCATAAATAGGCTCACATCTTACattaaaagagagatttttgaATTAAGGGttcattacttgattttaaaataattgaaggaaacacactatctactatctatgattatttattgaacatcaacgttgaacaactaaaattaacacacaaattgCCTAAACGAGCAGTCACTTTTTTCTTATAAgaagtgaaaataataaataacctgcacttttaaaaacaaaatcaattattttcaatgtttttgaaaGTAAGGGTAGGGAAAGTAATCCAAAAAAATCAACCTGGAAAAATTCAATCAATTATAGCATCTGAATGTTTATTAATCGCCTAGCCctagtatttagtttttttttttttttttttgagattctaACCCTGAGATtctagattttcaaatagttgtatctctgccaggcgatgcagtggcgcagttggtagtgctgtcgcctcacagcaagaagctcgctggttcgagcctcggctcagttggcatttctgtgtggagtttgcatgtagaCTAAATTGTTTAGtaatagtttatgagtgtgtgtgtaaatgagtgtgtatgtatgtttcccagaaatgggttggggctggaagggcacccgctgcgtaaaaaacgtgctgaataagttggcggttcattccgctgtggcgaccccggattaataaagggactaagccgacaagaaaatgaatgaatgaatgtatctctgccaaatattgtcctattctAAACAAGTATACAATGTGCCCAAACTTTCttttgaagggccaaaaaccaaacttgagtGTGTTTGGCCGAAGGTAAACATACCAAACTCTATTCCATTTTACTTGCCTTGGGtagtttcctaatttatttaatatataaaaataactagaaagcATTGCTTTATATTTACCTAATGCAGTGTATatcttttaattttataataaacattacagttaaaaacatttcataacatctcatttataacagaatggggtgacactagtcaagctgctcctgtttttgccttgatttgcttgccagTGTCTTCTGCATTGTCTTTTATCAGTCGAGTGACAgtctttttgtatttaaaaaaaatctaaataatttacaaacatgtaatttaaacatttaatttcagtttggttTTTCATAGCTCAGCaatgaaacaaaccaaaaagCTTTCGGTAAATTAGAAATTACGATCTCTGATAATGGCATTTGCTTCAACCCTTCTCATAATTtttcctctcttctcagatgggatggtgggccaaattaaaggttaccatgtgccaactttggcccgcgggccctagtttgggcatctgtggtatacatcaatggaaagattAGTAAATATGGACACATATGACTGGGTTTGTGGTCAAGGGTCGCATATGTAAATTAAGTCCTTGTTGGTACAAAAAGTACCTTAAAATTCAAAACTATTAACAATTGATATTCTGCTTTGTGGAACTGATCTATTAGGCTGCAGGAAACCAGTTTCTTCCATTGTTTCCACAGCAAGTGCTCAGTTGTTATTTTCCTCTTATGTGAGCCCTTGCTAGTGTTCCATGGTGTCTAGTACCTATAGTGTCTGAAAGCCATCGCTGTGAAACCTCCCCTCCTTTAACCCTCTCTTTccccttttctctctctttctccaggATTTTGTCATCCCTGTGGCTCTGCGACCGGAGACTGTCCCATGTCCTGTTCTGCTCTCTGGTTTCAGCTTGGCACATGGCCAACACGGGACACACCGagtcctcctcttcatcatcactGTCCTCCTCATCCTCGTCCTCCATCAGCTGTGGAAATcgaactgatgatgatgatgaagatgatgaagatgttgATGATGAAGGGTGAGAGTTGGAGTACACCTCCCGTTCATACACAGACAGGGGGAGCTGGAGGTAACGTCCGGCTGCGTATAGACAGCAGCAGGCAGGGACACACTCGGGCCCTTCCTTCCTCATCAGACGCAGTCGTTTCCGATACGACCCCGGTGGCGTTATGCAGGGCTGCAGGGCAGGAGGGGAGAGAGATGTATTTGCGGCTGGGGTTTGGAGGGGGCAAGGTGTGGTTGTCGGACCTGACGGAAAGCACCAGTCGCTCTGGAGGAGGATTTCGTTTCTAAGACGCCGGAGAAGGTTGTTGATGAGCACGGAGCGCCGTAAGAAGGACTCAGGGTCATCCATGAAACGCAGCTTCTCCAGAGAGAGACGGAGAATGTGAGCACGCTCCTCCAAGACTGGTGACACCTGCTGGCTCGGAGGACAAAATGAGCATTAATAAGAGAAGGACTCCAGGAGACTGTGCCATCGACACACCTGCTGTCCCTTTGACTCCTTCATCTCAGTCCAGTGAGTTAATTCTTCTTCTCCAGAGCTGTTGAGGCCCAGAGAGATCCAGCCAATCATCTCTTTGCGTTTCATGCTGCGCTTGTTGTAGACGGACAGGATGAGCGTGACGTCGGAGAGCTGAAACAGAGCTACCTGGAAAACAAAAGTCTCCTTGTAGGTGGGATTGGGTTGGCCTCGGCAAACAGACGTCTTACACTTGGACATCTCCTGACCCATTGAGTTGAGCAGAGTCAGCTTCACATACGTATCTGAAACAGCAGGAAAGAGAAGATCAGACCATCCATGTAGAAGCATTCGCCAGTCTAACATCAAGGATCGACGATGAAGAAAGGAAGCGTGAAAACAGAAAGATGGATGAGCAGCGGCCGATGCTGATAAAGGTAAGCCACAGAACACTCACCTCGGATTATGTACACTTGGCCACCTATCAAGTGCTTTagacaacagaacaaaccatctgaCAACAGGAGAGAGCAGAGGGGGATCATCAGGGAGGAAGAGAGAGAATGTCAACAATGGCAGGAGAAAAAGAGCAGGTCAAAAGGCTTGAAGGGTTAATCACATCAGGTCAGAGGTAATGTGTTCATAAAGCACACTGCGCCACTTCAGGATAAAGAACAAAGTATGCTCTGCTTTTTATCTACAAGCTAGggtatacatacagtatgtgtaaGTCTGACTGACAAGGTGTCAACATTGAATTTGGCTGTGTTTCACAGTCTATGAAGCACTTATTTGAGGGGATTAAAAAACATTCACAACTCTCTGTATTACAGGTGGATTTACATTTGTAGttattttgattttttgtttggtgcagacaacaaaaaataaaatgttatattaagtTCAGGCTAACTTAATGTTCACATTTt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00012021 lncRNA upstream 274346 31531431 ~ 31532435 (+) True XLOC_006094
TCONS_00011994 lncRNA upstream 851743 30951267 ~ 30955038 (+) True XLOC_006075
TCONS_00013627 lncRNA upstream 878120 30920554 ~ 30928661 (+) True XLOC_006074
TCONS_00013626 lncRNA upstream 1129138 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00011974 lncRNA upstream 1576431 30228121 ~ 30230350 (+) True XLOC_006062
TCONS_00013633 lncRNA downstream 104712 31955220 ~ 31978484 (+) True XLOC_006102
TCONS_00013408 lncRNA downstream 254757 32105265 ~ 32108472 (+) True XLOC_006103
TCONS_00013634 lncRNA downstream 1056135 32906643 ~ 32916926 (+) True XLOC_006112
TCONS_00013409 lncRNA downstream 1254403 33104911 ~ 33105228 (+) True XLOC_006116
TCONS_00012056 lncRNA downstream 1395704 33246212 ~ 33247575 (+) True XLOC_006118
TCONS_00012033 mRNA upstream 23118 31769809 ~ 31783663 (+) False XLOC_006100
TCONS_00012032 mRNA upstream 23195 31757331 ~ 31783586 (+) False XLOC_006100
TCONS_00012031 mRNA upstream 57811 31716820 ~ 31748970 (+) True XLOC_006099
TCONS_00012030 mRNA upstream 98911 31687973 ~ 31707870 (+) True XLOC_006098
TCONS_00012029 mRNA upstream 124830 31648271 ~ 31681951 (+) True XLOC_006097
TCONS_00012035 mRNA downstream 293862 32144370 ~ 32150443 (+) False XLOC_006104
TCONS_00012036 mRNA downstream 297830 32148338 ~ 32149779 (+) True XLOC_006104
TCONS_00012038 mRNA downstream 595661 32446169 ~ 32453932 (+) True XLOC_006106
TCONS_00012039 mRNA downstream 603754 32454262 ~ 32456842 (+) True XLOC_006107
TCONS_00012040 mRNA downstream 785689 32636197 ~ 32641537 (+) True XLOC_006108
TCONS_00012034 other upstream 29255 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00011984 other upstream 970005 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00011978 other upstream 1295058 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011975 other upstream 1554924 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011948 other upstream 2020760 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00012037 other downstream 541875 32392383 ~ 32392499 (+) True XLOC_006105
TCONS_00012044 other downstream 995985 32846493 ~ 32846609 (+) True XLOC_006111
TCONS_00012045 other downstream 1134146 32984654 ~ 32984769 (+) True XLOC_006113
TCONS_00012076 other downstream 2575740 34426248 ~ 34426365 (+) True XLOC_006133
TCONS_00012081 other downstream 3032738 34883246 ~ 34883370 (+) True XLOC_006136

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU83708 True 1439 lncRNA 0.35 1 CI01000012 8356066 ~ 8357504 (+)