| Item | Value |
|---|---|
| gene id | XLOC_006055 |
| gene name | pax2a |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007124.7 |
| NCBI id | CM002897.2 |
| chromosome length | 52186027 |
| location | 29770837 ~ 29805529 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| pax2a | Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including animal organ development; cilium assembly; and nervous system development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2). |
| id | name | namespace |
|---|---|---|
| GO:0021782 | glial cell development | biological_process |
| GO:0001708 | cell fate specification | biological_process |
| GO:0035775 | pronephric glomerulus morphogenesis | biological_process |
| GO:0021549 | cerebellum development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0060113 | inner ear receptor cell differentiation | biological_process |
| GO:0072114 | pronephros morphogenesis | biological_process |
| GO:0060118 | vestibular receptor cell development | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0021588 | cerebellum formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0043049 | otic placode formation | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0048596 | embryonic camera-type eye morphogenesis | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0021703 | locus ceruleus development | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0030878 | thyroid gland development | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0030901 | midbrain development | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0060041 | retina development in camera-type eye | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| GO:0034672 | anterior/posterior pattern specification involved in pronephros development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-8 | Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including animal organ development; cilium assembly; and nervous system development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2). |
| ensembl_id | ENSDARG00000028148 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00011937 | False | 3050 | mRNA | 0.46 | 10 | 29770837 | 29803764 |
| TCONS_00011940 | False | 1202 | mRNA | 0.54 | 11 | 29771463 | 29802516 |
| TCONS_00011939 | False | 879 | mRNA | 0.53 | 8 | 29771463 | 29802516 |
| TCONS_00011938 | False | 1221 | mRNA | 0.53 | 11 | 29771463 | 29802516 |
| TCONS_00011943 | False | 4246 | mRNA | 0.40 | 11 | 29771463 | 29805529 |
| TCONS_00011942 | False | 4267 | mRNA | 0.40 | 12 | 29771463 | 29805529 |
| TCONS_00011941 | False | 4201 | mRNA | 0.40 | 10 | 29771463 | 29805529 |
| TCONS_00011947 | False | 1145 | mRNA | 0.54 | 9 | 29773153 | 29802516 |
| TCONS_00011946 | False | 1171 | mRNA | 0.54 | 10 | 29773153 | 29802516 |
| TCONS_00011945 | False | 1190 | mRNA | 0.53 | 10 | 29773153 | 29802516 |
| TCONS_00011944 | False | 1126 | mRNA | 0.54 | 9 | 29773153 | 29802516 |
| TCONS_00011948 | False | 323 | processed_transcript | 0.51 | 4 | 29778337 | 29786021 |
| TCONS_00011949 | True | 1148 | mRNA | 0.53 | 8 | 29778610 | 29802787 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_006054 | CT025909.2 | coding | upstream | 15410 | 29755293 ~ 29755427 (+) |
| XLOC_006053 | CT025909.1 | coding | upstream | 179722 | 29590994 ~ 29591115 (+) |
| XLOC_006052 | chst3a | coding | upstream | 249985 | 29510023 ~ 29520852 (+) |
| XLOC_006051 | lrit2 | coding | upstream | 296533 | 29470442 ~ 29474304 (+) |
| XLOC_006050 | lrit1a | coding | upstream | 303279 | 29462249 ~ 29467558 (+) |
| XLOC_006056 | NA | coding | downstream | 83660 | 29889189 ~ 29891820 (+) |
| XLOC_006057 | cuedc2 | coding | downstream | 119868 | 29925397 ~ 29936259 (+) |
| XLOC_006058 | dnajb12a | coding | downstream | 229724 | 30035253 ~ 30046753 (+) |
| XLOC_006059 | spock2 | coding | downstream | 249467 | 30054996 ~ 30132256 (+) |
| XLOC_006060 | eif4ebp2 | coding | downstream | 357986 | 30163515 ~ 30168897 (+) |
| XLOC_006049 | NA | non-coding | upstream | 321116 | 29446817 ~ 29449721 (+) |
| XLOC_006042 | NA | non-coding | upstream | 673311 | 28915538 ~ 29097526 (+) |
| XLOC_006063 | AL929330.1 | non-coding | downstream | 446212 | 30251741 ~ 30251857 (+) |
| XLOC_006065 | AL844152.1 | non-coding | downstream | 706078 | 30511607 ~ 30511723 (+) |
| XLOC_006067 | NA | non-coding | downstream | 871296 | 30676825 ~ 30677643 (+) |
| XLOC_006071 | CR762493.1 | non-coding | downstream | 1031127 | 30836656 ~ 30836776 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000012_09589749_09615649 | PAX2A, PAX2 | coding | CI01000012 | null | 9588444 ~ 9615649 (-) |