CI01000012_09589749_09615649 (PAX2A, PAX2)


Basic Information

Item Value
gene id CI01000012_09589749_09615649
gene name PAX2A, PAX2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9588444 ~ 9615649 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_09589749_09615649.mRNA
CTACATAATCAAGGCGAGACGGCGACCTCAGTCGATTATCTTTCCTTCCTTTGCTATCCCATGGATATTCACTGCAAAGCAGACCCCTTCTCGGCGATGCACCGGCACGGCGGTGTGAACCAGCTAGGAGGGGTGTTTGTGAATGGCAGACCCCTACCTGACGTGGTCAGGCAAAGAATCGTGGAGCTCGCGCACCAAGGAGTCAGACCTTGTGACATCTCAAGACAACTACGGGTCAGCCATGGCTGTGTCAGCAAAATTCTCGGAAGATATTATGAAACCGGCAGTATTAAACCTGGAGTTATTGGGGGGTCCAAACCAAAAGTGGCGACGCCCAAAGTTGTGGATAAAATCGCAGAATACAAGCGGCAGAATCCCACAATGTTCGCTTGGGAGATCAGGGACCGACTCCTGGCCGAGGGCGTTTGTGACAACGACACAGTACCAAGTGTTTCATCTATAAACAGGATAATTCGAACCAAAGTTCAGCAGCCTTTCCACCCATCCTCCGACGGCACAGGAACGCCTCTCACCACAGCGGGACACACTATAGGTGATCTTGAGAGCACTCCATATACGTTAACCTATTCCTGTGCTCTTTCAGTGCCCAGCACAGCCTCCCCACCTGTGTCAAGCGCTTCCAATGACCCCGTGGGGTCCTACTCTATTAATGGCATCCTAGGAATCCCTCGCTCCAACGGCGAAAAGAGAAAACGCGATGATGCTATTAGGATCAGTTTGAGGCTAGCGCTGACTGAATTTGAGCTGATATACTCCAATCTTTCATCTAGTGGTGCTGAGAGGTGCACTACAGCGCTAGACGTAGCTGTTGTGTGGGATGGTTCAGATGGCTCTGGCCCAAACAGTGATTCTCAGGGTAGTGTGGAGAGTTTACGGAAGCACCTGAGGGCCGATGCCTTCACTCAACAACAGCTGGAGGCTCTGGATCGGGTGTTTGAGCGGCCGTCATACCCCGACGTCTTCCCTACGTCAGAACACATCAAGCCAGAGCAGGCTAATGAATACTCGCTACCAGCACTGAACCCTGGACTGGACGAAGTCAAGCCCAGTCTGTCAACCAGCGTCAGCTCAGATTTGGGCTCCAGCGTGTCACAGAGCTACCCGGTAGTGACAGAGTCACATTCATCCTCCGCGTGTGTTAAGCAGGAGCCGCATGAGGCTTCCCTGGCTCCTTTCACCCCTTCCTCACTGGCAGTCTCGGGCCTAGCGGAACTGTTGCCCCTCCAGCCCAGCGTGTCAGTAGATGCCTCCACCCCCTGCTACGGTGCCTATGCCCATCATGCCCCCAGCTACAGCCAGTATGCAAGCCAGCCTATTATAGCAGGTCGAGACATGGCAAGCACAACCCTACCAGGGTACCCACCTCACGTTCCCCCTACTGGGCAGGGCAGCTACCCCACCTCTACACTTGCTGGAATGGTCCCTGGAAGCGACTTTTCAGGAAATCCCTACTCTCACCCGCAGTACACAACTTACAATGAAGCTTGGCGGTTCAGCAACCCCGCGTTATTAAGACCATGGCCGCGGCCTCCATATCGTACCAGTCTGAATGGCGCTAAGGTCAGAGGGATTGAAGATGGCTACGCGGTCTTCAGTTTCATGGGGCCGAGATCGGATTAGGAGGGTCAAGCAACAGCGGGTCCCCCCCCCCCCCCTCACATCGACTATACCCCCACCCCCCCCACGCAACATCAACACTAAGGCTCTCATTCTCTAAATCACTGAACAATGACTGAACTCTTTCCTGAAAGACTTTGAAAGATTCTACAAAAATATATATATTATACAAGATATAAAACAAGATGAACCGTGTGAAGAAATACGAAGTAACAATTGATGTGTTGTTGTTTTTTTTTTGTTTTTTTTCTCTCTTTAAATCAATCAATACATTCCTTTACATACTGTATTTAGTATCACTAACAGATCACACACACAAGGTTGCCTGAGGCCTTTAAAGTAATTTGCCCATGTCCTACACCATCTCACTAGTGTCTTACCTCTCACGGACAGAACAGCGACGTGTCAGCTGAGCAGAAACCTGCATTATTGCTCCATTTTCTGTCAAACAGACAAGTGTAACAGTCTTAGAAGCCATCTCTGACTCGTGGTATGAAATTACTAACATTTTCTGTGATACACAATCAAAATGGGGGAAAAGAAAACAGAAAAAAAAAAAAGATAAAAACAGGTCAGACACTGAAGAAGTTAACTGTTGCTGTAAATGACCTGAAAAGAAAACCGTATATTAAATTATTGTTTTGGTTTAGCTGATGGTTTGTGTGCGTGTGTGCATTTGTGTGTGTCATACCTTTTCGGGATATTCCATTTTATCATCATGTGTAATCTCCAATATCATGATCGGTGCCGCTCTTTTCTCGTTTGCACTATTTTGCATTACTGGATTTATAAGTACAAATGAATTGCAATTATCTTCGACAGTTTGTCAGAATACATGTTACGTTTAAGCAAAAAGGTCTACTCCAATTGACAAAGTAACAGCAACACTGGACAAAAATTCACTTGCTATATGTTAGAAACTAGTATATGCCTTTTTTGTCCTTCCGTGTGGATCATAAAAGATTCCTTAAACTTCAAGAACCATTTTTGTATCGTGTAACTGAGACAGAACGACTGGCTCAGTACCAAAGTAATCATTAGCAGTCAATTGTACAACAAGTTCAACAAATGCCTTACAGCTTTTTTAATTTAATTTTTTTATGGTTTGGCTATGGTCCTGAGAGGTAGACATGCATGTAACCCCTCTGTGTGGTCGAACAAACGTTTCACCAAATGTTAACTGAGGATAGAAATGGAAAACGGTCCATCCATACGCTCCTGGAAATGTAAAGTGAATGTACTTTATACCACGTTTGCCAAAGACTTAGTTTGATATTTAATATTTTATTTGCTGTATCTGTCAATAAA

Function

symbol description
pax2a Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including animal organ development; cilium assembly; and nervous system development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2).
pax2 Enables DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including kidney development; negative regulation of cellular metabolic process; and positive regulation of epithelial cell proliferation. Located in centriolar satellite and nucleoplasm. Implicated in focal segmental glomerulosclerosis 7 and renal coloboma syndrome. Biomarker of nephroblastoma.

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process

KEGG:

id description
K15608 PAX2; paired box protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_09589749_09615649.mRNA True 2946 mRNA 0.46 12 9588444 9615649

Neighbor

gene id symbol gene type direction distance location
CI01000012_09513757_09517777 CUEDC2 coding downstream 70667 9513268 ~ 9517777 (-)
CI01000012_09465977_09473475 DNAJB12A coding downstream 114969 9465948 ~ 9473475 (-)
CI01000012_09419200_09460604 SPOCK2 coding downstream 127156 9419095 ~ 9461288 (-)
CI01000012_09400481_09401810 EIF4EBP2 coding downstream 186066 9398076 ~ 9402378 (-)
CI01000012_09379379_09394499 PALD1B coding downstream 193394 9379151 ~ 9395050 (-)
CI01000012_09754856_09756772 CHST3A coding upstream 138946 9754595 ~ 9756956 (-)
CI01000012_09782840_09786910 LRIT2 coding upstream 166961 9782610 ~ 9786910 (-)
CI01000012_09789066_09792437 LRIT1A coding upstream 172046 9787695 ~ 9792437 (-)
CI01000012_09830411_09851586 OGDHL coding upstream 214516 9830165 ~ 9851870 (-)
CI01000012_09862141_09892366 PARGA, PARG coding upstream 246226 9861875 ~ 9892366 (-)
G74986 NA non-coding downstream 3274 9584874 ~ 9585170 (-)
G74982 NA non-coding downstream 12295 9575648 ~ 9576149 (-)
G74981 NA non-coding downstream 16009 9572222 ~ 9572435 (-)
G74976 NA non-coding downstream 32913 9555299 ~ 9555531 (-)
G74973 NA non-coding downstream 44248 9543959 ~ 9544196 (-)
G74994 NA non-coding upstream 15590 9631239 ~ 9631450 (-)
G74996 NA non-coding upstream 20498 9636147 ~ 9636398 (-)
G74997 NA non-coding upstream 21256 9636905 ~ 9637144 (-)
G75001 NA non-coding upstream 23797 9639446 ~ 9639649 (-)
G75004 NA non-coding upstream 26061 9641710 ~ 9641944 (-)
CI01000012_09082056_09083285 NA other downstream 504955 9081877 ~ 9083489 (-)
CI01000012_09071892_09073410 NA other downstream 514987 9071371 ~ 9073457 (-)
CI01000012_09068458_09070536 NA other downstream 517777 9067906 ~ 9070765 (-)
G75608 NA other upstream 996266 10611915 ~ 10620871 (-)
CI01000012_12047175_12052116 NA other upstream 2433395 12046728 ~ 12052541 (-)
CI01000012_12079581_12084139 NA other upstream 2463287 12078936 ~ 12084260 (-)
CI01000012_12954694_12954954 SF3B5, BRAFLDRAFT_284483 other upstream 3338797 12954446 ~ 12957833 (-)
G77287 NA other upstream 4003627 13619276 ~ 13633819 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006055 pax2a coding NC_007124.7 CM002897.2 29770837 ~ 29805529 (+)
bowfin (Amia calva) AMCG00002952 pax2a,pax2 coding CM030139.1 CM030139.1 7695359 ~ 7733537 (+)