CI01000012_12954694_12954954 (SF3B5, BRAFLDRAFT_284483)


Basic Information

Item Value
gene id CI01000012_12954694_12954954
gene name SF3B5, BRAFLDRAFT_284483
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 12954446 ~ 12957833 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_12954694_12954954.mRNA
ACTCCTATCTCTCCTTTCTAAAAAAAAATTCACACAATATTTTGGTGATTCATAGAGACACATCATATCAGAATCACTAAGTGTTTTTGCAGTATCGACACATTGTATATACAATAAGAGAGAACACAAATATCCCAGATAGCACACAGAGATGTCTAGTTAGTGTGCATGTTTTCATCTGATAGAAGTATTTTTAGACCATTTGCTGATCTGCAATATGTTTCCTGTCAGAGGTCAATAGAAACTTAAACTGCTTTTTAAAAGATGTTTATCAGATGTTTGCACACAACAAATGCTTTCCAGCTGAAGTGCTCTTTAACAGATATCTTTGTGATGTACATGTACTGTATGAACCCAGAAAACTGCACTAGACAAGTTCTATTTTGCAACTGCAGCATGCTGTCTTTCACTGCTGCTAGTAAGATAACGGTTTGACCACTGATATTGTAGAAGATGGCAAACTCCATTAGTGACAGATTGTTGATGTTAAGAAAAAAATTGGGTTGCAGAAGTAAGATCATTTATGTCATTTCCTCTAAATTACATTAATGAGACCAAACAGAACCCAATCAAGTGGATGATTCCATTTTTGATGACTCACACATACATTTTTTTTAACATTAAAATATGAAATGAGATCTGCTTTATGAAAAAATTTCCTTGCCAACAAACCATCTGTGTGATGTGACCATCACACCCTCACTGAACATAACAAAGTCTTTGTTTTTTAATGTAGTCAAAATCAGTGCAGTAAATCCGCAGTTTCTTTATCATCATTATACAAACAAAATCAGCATATTTCCTTCAAAAAACAATTATAACCATTTATTATGATTTGGAACATTTGATTCTGACTGGTCAGTCGCAGCATTGAGAAGTTCAAATGTTTTATAGTCTATAAAGCGCAACAGTTTGGTTAAATCCCATTCCTTTTCTCCAAGGTGAATCGATTTTTATAAACTCTAAAAACTCTAAAGCTTCAAGGTTGTTAATCAGCAGTATATGATTTTGTTGAAGCCATCATGTTTAACAGTGTGAAAAACATCATTACCCATAATTCTGAAAAAATCTCCCCATTAAAGAATCAAAACAAGCAATTGCAATAAGAACTATCTAGCACATGGCACTTTATTGCTTCAAATTAAAGTTTGTAATGTGATTTACCGTGTACATGGTTGGTTTGGTTCATGGATTAAAACTCTTTAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAACAGTGGGAAGAAATGAAAAAACTTTTTAATCAAGGCCTCTGAAAAACACTGTTGGACTCTAACCACCTTACTTTGCAACACGAAGTAGGCTATTTTCTGTGAATGTGACTTCCGAGACTCCCGATTCATTAGGTGCTACAGGTAAATAACTAGGCTAAAGAAATAACAACATGCAGTAAACGGTAAAACTATTTGCTCTACAAACCAGTGTGATTGTGATTATGGTAATAAATTGAAATAATATTATAACAAATACCAGTTTGCAATGTAAAGGGACATAATGGCTGTTTTTGTACGGGTAAAATAACTGGAAGCAAAATGACACTGGAAGCCTTGCACATTCAAGTTATATTAGGTGGATAATGAATCCTAAAATTGATATTTTACTGTTGTCCATGGCAACATACATGTGCTACTTCAATGTTTCTTGTATCACTCTGAGGTCTTTTCATATCAATCAAGGTAAGTTAAAATAGTTGACTTAAAATGGTTACTATAACCACTGATTGTAATAAAAATTGCCAGCAGGGCAGTGTTCATTTTAATGTAGGCTATTTGGTAAGCATGCAACCATTGTCAGATGGTTAGAAGCTCAGGAGTCCAGAGTTAAAGCAATAAAACATAAACTAGAAGGAAAAATAGAAGATTTGTTACATCATAACCTAATTATGCTAGATAACTAATCTACAGGAAAAGTAATGAAAGATATTTTTTTATTATTGTTGAAATGTTCACCCTGTCGCTAGGCTTTACAATAGTCAAGTAAGATAATGATATAATTTAAACTTAAATCAATAATCAGCCAGTCGTTATCACAATAATAAACCCCCTCAGAGTGATCAGGACCTACCACGCCTGTGGTTCATCAGAGCGGAACTCTTGTCTACGGCAGTATTTTCCACAGCGACAGATATCTGAGTAACTCCTTCCGCTCCTGTTACAGCCTGTTTCCTCGCACAGCAACTGAGCTAACAACTGAGCACTGTTAAAGCGTCCGTTTATTTACTTTTCTCACATCTTTCTCCGGTTTTTTTTTCACCATAGGTAAGTACAATAATAGTATTTGTAAACAATAACCAACGACAGTATTGTGGTTTAAGGAGAAATTTGATTTGAAAGAATGCGACCATTTTAGCTAAATTAGCTTAACAGCAAATATACTTAATGTCCACAACGTAGTACAAGCTGATGGGTTTCATTTGTTTTTCTGTTTGGATTTACGGCAAGTCTGAATAACTTTTGCTTTTCGGCTGTCCGAGCAACTCTTCATAATGTAACGTTAAGCTATTTCGTACTGTACTTCAACTATCTCTCTTCCTCAAACACACAATCTGTAGTTGTTAGTAGTCCCAACCACACTTGTTTTTGTAAAACAGTGAATGAGAGAGCCTAATTTCTGAGGGAAAATATTACGAATATTTTTCGAAACTTGACGTAATATGAAAAATAAATCAATTCACATCTTTAGTAAATTGGCAGTGTGTTGAAAACAAACACGTATTTCTGAGAAAACCATGATATATATTATTTGAGTTCTGATATGTTGAAGAATACGTTTTTATACCTCAGAGGGGGTTTAAGTTAATATTAATTTTCTTTCTATGTGTCAGAAACACAGATTTTTCTAACTGAAGATGACAGACCGCTACAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGCCACGCAGACACTAGCAAATGGGAATGGCTAGTTAACCAGCACAGAGACTCATACTGCTCCTACATGGGCCATTTCGACCTTCTCAATTACTTTGCCATCGCTGAGAATGAGAGCAAGGCTCGTGTCCGCTTTAACCTGATGGAGAAGATGCTGCAACCATGTGGTCCACCAGCCGACAAACCTGAAGATGCTTAGGGCTTGCGACTGAATCCCTACTCGATGTTTTATAAGGCTCTGCTTTTGATGTGTTCATTGAGCGATGCGCTGAGAGATCAGAGAGAGAGAGAGACCCTGGACACATGGGGGTTGTGGGTGCTCTTTAAATCAATGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTAATGCTGATTTTTTTTTTTTTGTGATATTTTGTATAGGTTGTTGAACTGAAAGTGTATTAAGAAAATAAA
>TU87800
CCTTCCGCTCCTGTTACAGCCTGTTTCCTCGCACAGCAACTGAGCTAACAACTGAGCACTGTTAAAGCGTCCGTTTATTTACTTTTCTCACATCTTTCTCCGGTTTTTTTTTCACCATAGAAACACAGATTTTTCTAACTGAAGATGACAGACCGCTACAACATCCACAGTCAGCTGGAGCATCTGCAGTCGAAGTACATCGGCACGGGCCACGCAGACACTAGCAAATGGGAATGGCTAGTTAACCAGCACAGAGACTCATACTGCTCCTACATGGGCCATTTCGACCTTCTCAATTACTTTGCCATCGCTGAGAATGAGAGCAAGGCTCGTGTCCGCTTTAACCTGATGGAGAAGATGCTGCAACCATGTGGTCCACCAGCCGACAAACCTGAAGATGCTTAGGGCTTGCGACTGAATCCCTACTCGATGTTTTATAAGGCTCTGCTTTTGATGTGTTCATTGAGCGATGCGCTGAGAGATCAGAGAGAGAGAGAGACCCTGGACACATGGGGGTTGTGGGTGCTCTTTAAATCAATGTTTTGTTTTTTGTTTTTTTTTGTTTTTTTAATGCTGATTTTTTTTTTTTTGTGATATTTTGTATAGGTTGTTGAACTGAAAGTGTATTAAGAAAATAAAGTTGATACCCTAAC

Function

symbol description
sf3b5 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and precatalytic spliceosome. Orthologous to human SF3B5 (splicing factor 3b subunit 5).

GO:

id name namespace
GO:0071011 precatalytic spliceosome cellular_component

KEGG:

id description
K12832 SF3B5, SF3B10; splicing factor 3B subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_12954694_12954954.mRNA False 3374 mRNA 0.35 1 12954460 12957833
TU87800 True 653 TUCP 0.43 2 12954446 12955664

Neighbor

gene id symbol gene type direction distance location
CI01000012_12902396_12904687 AGT coding downstream 48839 12902161 ~ 12905621 (-)
CI01000012_12872801_12891084 PGBD5 coding downstream 63376 12871862 ~ 12891084 (-)
CI01000012_12811846_12819195 NA coding downstream 135099 12811734 ~ 12819361 (-)
CI01000012_12783994_12795809 NA coding downstream 157891 12783924 ~ 12796569 (-)
CI01000012_12751670_12759821 ABCB10 coding downstream 194639 12751273 ~ 12759821 (-)
CI01000012_12960774_12964242 OPRM1 coding upstream 1868 12959701 ~ 12964929 (-)
CI01000012_12977279_12978570 NA coding upstream 19189 12977022 ~ 12978817 (-)
CI01000012_13015424_13018020 NA coding upstream 57541 13015374 ~ 13019645 (-)
CI01000012_13041401_13060443 PCNXL2 coding upstream 82819 13040652 ~ 13060443 (-)
CI01000012_13085906_13090647 NA coding upstream 126284 13084117 ~ 13090653 (-)
G77207 NA non-coding downstream 32658 12921578 ~ 12921802 (-)
G77205 NA non-coding downstream 35147 12918932 ~ 12919313 (-)
G77202 NA non-coding downstream 37787 12916431 ~ 12916673 (-)
G77201 NA non-coding downstream 40537 12913698 ~ 12913923 (-)
G77200 NA non-coding downstream 41349 12912848 ~ 12913111 (-)
G77237 NA non-coding upstream 84180 13042013 ~ 13042222 (-)
G77238 NA non-coding upstream 84708 13042541 ~ 13042765 (-)
G77243 NA non-coding upstream 104072 13061905 ~ 13062333 (-)
G77241 NA non-coding upstream 124158 13081991 ~ 13083934 (-)
G77254 NA non-coding upstream 136447 13094280 ~ 13094498 (-)
CI01000012_12079581_12084139 NA other downstream 870200 12078936 ~ 12084260 (-)
CI01000012_12047175_12052116 NA other downstream 902253 12046728 ~ 12052541 (-)
G75608 NA other downstream 2333589 10611915 ~ 10620871 (-)
G74982 NA other downstream 3378488 9575648 ~ 9576149 (-)
CI01000012_09400481_09401810 EIF4EBP2 other downstream 3552492 9398076 ~ 9402378 (-)
G77287 NA other upstream 661443 13619276 ~ 13633819 (-)

Expression


Co-expression Network