XLOC_006052 (chst3a)


Basic Information

Item Value
gene id XLOC_006052
gene name chst3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29510023 ~ 29520852 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011933
CTTGTGAACACACACAGGGGGTTCTTATTTGACCACGTGACCGTGTATCCAAGGATAGCCCAAAACTTGGAAACCGCCGAGTAATGGACATGTTTCCCAGCATGATTTACCGGAGAAAAACGCACATGGATAtacttgaataaaaagtatttaggAAATGCTAGAAGAGTGAAATGACTTTGGAACCGTTTAGCATATGAATTCCTGTTTAGAAATGCCTAAATGGGAAGTTCGTTTTCAGTGAAAGGTCTCGCTTTGTTCGTGGAAACAAGTGCATTAAGTCTATATTACAGGATTGATAAACCTTTTTCTTTCGTGTAATTTGAGTGATAGCCTATTCCCTCAAGTAAATGAGCGCAGTGCTTTGGAGTTTTTATTTTCGCACAGGAACAATGTGTACCAGACGCAATCATTTAGGATGCTCCAGATGAACCAGTTCCGTTCAGTaagATGAATTGTAGACCTAGGTTCTGACATGAGATGAACCCAAAACAGTTGGCAGAAGTGACTAAATAGCAGTCTGTGGAGGGATTTCCgaaagaaaagttcatttgaggATGAGGAACAAGTACGCAATCATCATCATCTGCATTGTGGCACTTGTCATCATTGAAAAGGAAAACAATATTATTTCAAGGGTCTCAGACAAGCTGACTCTCCGACGGACGCAGGAGCATCCAGTGCCCTACAATGCTTCCAATACTCTGGTAGCAACAGGGTACAACAGTTCCTATCTAGAGAGCATATATGGTAAAAATGGCAGTCAAGCAGGCCGAAAGCACATCCTCCTAATGGCCACAACACGGACAGGATCTTCCTTTGTGGGCGAGTTCTTTAACCAACAGGGCGACAACATGTTTTACCTCTTCGAACCACTCTGGCATGTGGAGAGGATGCTATCTATTGGCTCGAGTGGCACAAATGGCAGCATGTCTGTTTGGATGTACAGGGACGTCCTGCAGCATCTTTTCCTGTGCAACTTCTCAATGTTGGAGCGCTTCATCAGTCCTCCTCCGCGGGATCACGTTACCCCTTCCCTGTTTCGCAGAGAGTCCAGCAAAGCCCTCTGTGAGGAGCAAGTTTGCTCTCCAGTCGTAAAGTACATTTTTGAGAGATACCATTGCAAGACAAGACGTTGTGGGCCTCTTAATTTGACCATGGCGTCCGAGGCTTGTCTAGCAAAACATCACAGGGTGATCAAAACAGTTAGAGTACGTCAACTAGACACACTCCGTTCTCTAGTAGAGGACCCTCGGCTGGATGTCAAACTCATACAGCTTGTGCGAGACCCTCGAGCTATCCTGGCTTCGAGGATGGTGGCGTTTGCTGGCAAGTACCAGAACTGGAAAAGTTGGGCTGTCAATGGGGAAGTGCCAATAGAGGATGAAGAGGTTAAGCGTCTTGAAGGAAATTGTAACAATATCCGAATCTCCGCCGAGCTGGGCTTAAGTCAACCCAAATGGTTGAAAAAACGCTATATGTTGGTACGTTATGAGGATATCGCCCGGTACCCCATGCAGAAAGCAGCAGAAATGTACAATTTCACAGGCATCCCGATGACGACACAAGCAAGGGACTGGATCCTCAAGAACACACACGCATCAGAAGCAAACGGAGTCTATTCAACCCAAAAAAACTCTTCAGAACAAGTGGAGAAATGGCGGCTCAGTATACCATTCAAACTTGCACAAGTTGTACAAAAAGTCTGTGGACCGACCATGAAACTTTTTGGGTACAGGTTTATAGACAGTGAACAAacacttttaaacaaatctttcagTGTGCTGGAAGAAAAGCAATTCATTTAG
>TCONS_00011934
CTGGTTAATTGTGTGCCATAGTGAGCAGTGAACTGCTGAGACGTTGTGCTGTTGGACCTGATCATCTTTCATCATTCCACATTAGTGGAATTACTGGACAGATGAATTGTAGACCTAGGTTCTGACATGAGATGAACCCAAAACAGTTGGCAGAAGTGACTAAATAGCAGTCTGTGGAGGGATTTCCgaaagaaaagttcatttgaggATGAGGAACAAGTACGCAATCATCATCATCTGCATTGTGGCACTTGTCATCATTGAAAAGGAAAACAATATTATTTCAAGGGTCTCAGACAAGCTGACTCTCCGACGGACGCAGGAGCATCCAGTGCCCTACAATGCTTCCAATACTCTGGTAGCAACAGGGTACAACAGTTCCTATCTAGAGAGCATATATGGTAAAAATGGCAGTCAAGCAGGCCGAAAGCACATCCTCCTAATGGCCACAACACGGACAGGATCTTCCTTTGTGGGCGAGTTCTTTAACCAACAGGGCGACAACATGTTTTACCTCTTCGAACCACTCTGGCATGTGGAGAGGATGCTATCTATTGGCTCGAGTGGCACAAATGGCAGCATGTCTGTTTGGATGTACAGGGACGTCCTGCAGCATCTTTTCCTGTGCAACTTCTCAATGTTGGAGCGCTTCATCAGTCCTCCTCCGCGGGATCACGTTACCCCTTCCCTGTTTCGCAGAGAGTCCAGCAAAGCCCTCTGTGAGGAGCAAGTTTGCTCTCCAGTCGTAAAGTACATTTTTGAGAGATACCATTGCAAGACAAGACGTTGTGGGCCTCTTAATTTGACCATGGCGTCCGAGGCTTGTCTAGCAAAACATCACAGGGTGATCAAAACAGTTAGAGTACGTCAACTAGACACACTCCGTTCTCTAGTAGAGGACCCTCGGCTGGATGTCAAACTCATACAGCTTGTGCGAGACCCTCGAGCTATCCTGGCTTCGAGGATGGTGGCGTTTGCTGGCAAGTACCAGAACTGGAAAAGTTGGGCTGTCAATGGGGAAGTGCCAATAGAGGATGAAGAGGTTAAGCGTCTTGAAGGAAATTGTAACAATATCCGAATCTCCGCCGAGCTGGGCTTAAGTCAACCCAAATGGTTGAAAAAACGCTATATGTTGGTACGTTATGAGGATATCGCCCGGTACCCCATGCAGAAAGCAGCAGAAATGTACAATTTCACAGGCATCCCGATGACGACACAAGCAAGGGACTGGATCCTCAAGAACACACACGCATCAGAAGCAAACGGAGTCTATTCAACCCAAAAAAACTCTTCAGAACAAGTGGAGAAATGGCGGCTCAGTATACCATTCAAACTTGCACAAGTTGTACAAAAAGTCTGTGGACCGACCATGAAACTTTTTGGGTACAGGTTTATAGACAGTGAACAAacacttttaaacaaatctttcagTGTGCTGGAAGAAAAGCAATTCATTTAG

Function

symbol description
chst3a Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in head; pectoral fin; pharyngeal arch cartilage; and somite. Human ortholog(s) of this gene implicated in osteochondrodysplasia and spondyloepiphyseal dysplasia with congenital joint dislocations. Orthologous to human CHST3 (carbohydrate sulfotransferase 3).

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0006790 sulfur compound metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008459 chondroitin 6-sulfotransferase activity molecular_function
GO:0001517 N-acetylglucosamine 6-O-sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-180 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in head; pectoral fin; pharyngeal arch cartilage; and somite. Human ortholog(s) of this gene implicated in osteochondrodysplasia and spondyloepiphyseal dysplasia with congenital joint dislocations. Orthologous to human CHST3 (carbohydrate sulfotransferase 3).

Ensembl:

ensembl_id ENSDARG00000061070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011933 False 1808 mRNA 0.45 3 29510023 29520852
TCONS_00011934 True 1459 mRNA 0.46 3 29519115 29520852

Neighbor

gene id symbol gene type direction distance location
XLOC_006051 lrit2 coding upstream 35719 29470442 ~ 29474304 (+)
XLOC_006050 lrit1a coding upstream 42465 29462249 ~ 29467558 (+)
XLOC_006049 NA coding upstream 60302 29446817 ~ 29449721 (+)
XLOC_006048 ogdhl coding upstream 103328 29352842 ~ 29406695 (+)
XLOC_006047 parga coding upstream 160699 29292011 ~ 29349324 (+)
XLOC_006053 CT025909.1 coding downstream 70142 29590994 ~ 29591115 (+)
XLOC_006054 CT025909.2 coding downstream 234441 29755293 ~ 29755427 (+)
XLOC_006055 pax2a coding downstream 249985 29770837 ~ 29805529 (+)
XLOC_006056 NA coding downstream 368337 29889189 ~ 29891820 (+)
XLOC_006057 cuedc2 coding downstream 404545 29925397 ~ 29936259 (+)
XLOC_006042 NA non-coding upstream 412497 28915538 ~ 29097526 (+)
XLOC_006044 NA non-coding upstream 426732 29083087 ~ 29083291 (+)
XLOC_006043 CU639469.2 non-coding upstream 585058 28924846 ~ 28924965 (+)
XLOC_006039 NA non-coding upstream 692141 28808092 ~ 28817882 (+)
XLOC_006063 AL929330.1 non-coding downstream 730889 30251741 ~ 30251857 (+)
XLOC_006065 AL844152.1 non-coding downstream 990755 30511607 ~ 30511723 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09754856_09756772 CHST3A coding CI01000012 null 9754595 ~ 9756956 (-)