XLOC_006047 (parga)


Basic Information

Item Value
gene id XLOC_006047
gene name parga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29292011 ~ 29349324 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011929
aaaaaaatcaccaaaaaaaattaaagctttcACGTGACCAGAAACTATCCAATCAGCAGTAGCTCTACGACCCGGAACTGATGCCTTTCTCTGCACTCCTTTCAGTGTGTTTAATTTTTAGTGTGTGTTCTTCTTTCTGTTTTGATGGTGTGATAAATACGACACATCTTTGCATAAGTCGGCGCCGTTTTCCCGTCTGCTGGAAAAGAGCTCGAATATGTGTGTGAGCTGCACAACGACACGAAGACAAAGCAGAACAGGAGTGCAACAAGCAGTCTGGCAGACAGTGTATTTACGGTGAATATGGATTCATGTAATACAGAACCTAAGAGACATGAGGTTGACGTTACGATGTCTGATGATGCAGGAAGTGATGAGCCTGAAATAAATGAAAGCAATCAGACAGGCATGACTGACGATGAAAAGATATCTGAATTAACAAGAAAGCGTAAGGAGCAGAATGATGAATCTGTAAACCAGAACCAGTCCTCTTTGGCGAACTGTGAAATAGACACAAAGGGCATCATTTATAGAGATACACCTGCTAGTAATGATTCAAGTACTCAGACAAAGCCAAGCAATGGGGAAAGAGCATCTGAATCAAACTCACCAGATCCCAAGGTTGGCAAACTGACTTGTTTGTCTACAGAGAAATCAGAGACAAACCTCAGCCTGTCACTAAATGCAGGTGACACAACTGTTGAAGATGTGGAGATGAGTCCAGAGAGTCCAGTATGCCAAGCACCTCAGTCCAGCAATTCGGAGGAAAAATCTGTCTGCTCTGACCTGCCAGAGGGTCATTTGAGAGAAGGGCCAACAGAGGAGCCCAAACCCTCAATTCCCAGTCCAGAACCTGTTAAAGATACTGGAGATGACATCAAGGATGATTCTGATGTGGTACCTATGGAAACAAATGATACAGAGGAGCCAAATTCTTGTGCTGGTGCTTCTGTTTCTGACAATGTGCCCACCACTGAGCCTGATAGCCAGACACAGGCATCTTCGTTAAAAAgTGAGCAAGTGCCGGCGGAACAGGAGGAACCGGATTGGCGCGGGACCCCAATAGAGAATCTAAGGAGAATGCCAAAGTGTGGACAGACCCTGCCGCACCTCAGGGCAACAGACAATCACAGAGTCCTCATCAGGACAGATCTACTTAAAGAAGGTCAAGTCCCTGTTCCTTATCCGACCAAATTCAGAGATTCTTGGGATGATATGAACGTAAAGATGCCTTGTTCAGAAAAGAACATGTTCCCTATGGAGAATGAGGATGGAAGTGGAGTGCAAAGTCGGTGGGAGTTGATTCGTTCTGCTTTGGAAGGAGAATGCAAAAGTTCACTTGACATTAGGGATGCAATATTGAGTTACAACACAGCGCATGCTAAACGATGGGACTTCACAGCTTTGAACGTCCTCTGCACTGAGGGTATGGAAAATGATGAAGTGCAGCATCTATTTAACACCATATTGCCAAAGATGGTGAAGCTGGTTTTGAACACACCCAAGATTTGCACTCAGCCAATCCCGCTGCTTAAGACGAAGATGAATCAGTCCTTGACCATGTCACAGGAACAAATTGCCTGCCTTCTTGCCAATGCCTTCTTCTGTACATTTCCCAGACGCAACTCGCGCAAGTCTGAGTACGCCAACTACCCCGAGATCAATTTTTACAGACTGTTTGAAGGCTCCTCTCAGCGCAAAATTGAGAAACTCAAAACCCTGCTGTGCTATTTCAGGAGAGTCACGGAATCTATGCCCACCGGCCTCGTCACATTCAAAAGACAGAGCTTGACCACTTTTCCTAAATGGGAAAGcTCGAAGTCTCCGCTCAGCCATCTTCACATCACCTGTAAGGGCACCATAGAGGATCAGGGCTATGGTATGCTGCAGGTGGACTTTGCGAACAGGATGGTGGGTGGAGGGGTGACAGGTCTGGGTTTGGTCCAGGAGGAGATTCGCTTCCTCATCAACCCGGAGCTCATCGTATCTCGCCTCTTCACCGAAGTCCTGGACCACAACGAGTGCCTCATCATCACAGgcaCAGAACAATACAGTAAGTACTCTGGCTATGCAGAGAGCTTCAAATGGGAAGACAATCATAAAGATAAGATACCCAGAGACGGTTGGCAGCGAAGGTGCACGGAGATTGTGGCTATGGATGCACTACACTACAGGAATTTCATGGATCAGTTTCAACCTGAGAAAATGACCCGAGAGCTAAACAAGGCATATTGTGGTTTCATGCGGCCTGGTGTGAACCCTCTGAATCTCTCTGCTGTTGCCACTGGGAACTGGGGATGCGGTGCATTTGGAGGAGACACAAGACTCAAAGCTCTGCTTCAGTTGATGGCGGCGGCTGAGGCAGGCAGAGATGTGGCCTACTTCACTTTCGGAGATGAAGCACTCATGAGGGACGTGCAGGACTTACACAAGTTCCTTAAAGACAATTGTGTCACTGTTGGCTCTCTGTATGTCTACCTAAAGCAGTACTCTAGCATAGTGTCTAAGCAAGCCCATAGGCCCAACATCAACCTCTATGGGTTCCTCTATGAGAAGGTTGGTACAAATACGGACCCGGAGCCCAGCGACAGCACCTCGACCACTGCAACTTCCCCTTCTCCTGCAGACTGCCATTAATGCTCATCAACCCATCTAAATGCCTCAGTGCTTTCTTCTCCTTTTGGGTGATTGTCTGAAATTTAGTAAAGCACATTATGCCTTTCTTTTCTACCAGTGAGTATGTGTTTAAAGTCACTAACAAGAAGACTGGACTGCAATAGTCACTTTTGACTGTCAAttcttattaaagggatagttcacccacacgaaaatgaacatttgctcGCTTACGaattgttccaaacctatttgagtgtcttctgttgcaaataaaaaaaagataatttgagGAATGTTAGAAAGTGTTAGCTATTGATATCCATtctaagaaaaacaaatactatggaaatcaatggatactgacagatttatttttttattttttgggtgaactattcttttaagtaTCAAACATGGAGAGTATTAACAAAAATGCCACACAAACTGACCTGGGAACAGTTACTGCATGATCCTGTGGAACTAAATGATCCTTTTTAGGTTGGCTGACCATggagtagtttttttttccttatccAGAAACTAACAGTGATTCATTCAGAATAAAGGTTGTAGAGGTAATGAACAAAATATGCATGAGAATCTCAAAATATGCCGTGAAGTCCCCAGTGACACTTGATTGTGAAACGTGGTGCACAAGATtgatcttttatttgtttgtttgtttgtttgttttctgtagtGGGAAAAAGTTCTGGTTGTATATTGAAAAATGTGAAAGTAAAtacacttttgaaaaaaaatagacTTGTATCATCGCACTAACAGAACTGCTAGAACTGAAGTCAGATTTTTGTGGGGGGAAAAACATATAGTCTCTGCATGATGTTTTTAGCAATTTATTACACAGGTTTTTACagtttcatttattcttttgatTAAAGGCACCTTTAAGAAATGGGGTTAATATTTAAAGGTAGTGAATATTTTCATatgttttgctgtttattttattataatttgataATTAAAATTGTTGATTCAAAGACTTGTTATGCTTTTTTTCCTAAAGTTTTTCCAAACCTCAGCTTTATCAGCAGGATGATTGAATAGACTTTcttttcactttaatttttttcagtccTTGTTATTGGTGATGGCTGTATAAAATACATGTTTAGGACTACCTGCTAAtcaaaacatgctaatttactcAAATAGATGCATAGTGTACCGCTACTTCTGCTTTATcaaatattcaattatttatgttcAATTACATATTCAATGCCATCTCTTCATCACAATGAAAAATGAACCTTACAGTGTTTGTCATGTATGTTATTATGGGATTTAAGATTTATCTTTAAGAGGttaattttacattcattttaaaagtgacattttacTACATAAGTAGGTAGATATTTAAACAAAAGCATATTGATTTTAATGATAACAGCAATTTAGGGGTCTAAAAATGCACACTTTggaaattattgatttatttattgaaaatgaaaccATATTATGGTATAAATTACCTCTAGATTTTCCTATAGGGCGTTTTACAATGAGGTTTTTCAGTTTATGAGGAAAATAATGTTGGTGGTAAATTAAACCTATGTGAATTTTACACACCCAtatttgaaaatttacattttaagcgGTTTATTAGCTGTGAATTTatgaaacatgttttttaaaaaagcaaatagaTAAAAATGTGAGTCATGATTTAATGAAAACAGTAATATAATGCAAATGCATTGTACATGTTTAATTTATAGGCATGCACAAAGCCTATAAACAAGGATGCGTCGATAGAGGTCGTTCCTGTGGGGTGTTATAGCCTACACAACCCATCCTCATATTGGAAAGGTCAAAGCCGGTCCATCAACACTCAAGAATTAGGAagatatattataaaaatgaatTATATGTGGATGATTTTAAAACAAGCCAACATGCTTCTTAATGAATTATAAATCTGTgcagtattttctttttaataaacattGACAACTTAGACAACTCATTGATGCCTGCGGTATGGTGACATGTTGACCAATTAAAAATGACATATCATAGTAGAGTATCTGCAACAATTGAATGTGTCATCTACTCACAAATCAGTGTGTGAGTACTCGGCAACCAAAACAATACTGCTTAGTTAGGAGTGCATGTGCAACCTCTCCTGTCGTACACCCAACCGATTGTGGGGATCAAACTTGCAATTCCCGCATGGGTGGCAACGAGGAGGCTAAAGAGCTTGACCGCTAGTCTGTcagtagagcaccttttgagATCAAAGTTAGGCCATGTCCACATACAGGTATTTTTATAAGTGGAGTTTtcttctaatttatttatttatttatgtcgtTCACTTCAAAATGCATATTGTACTTTAATGGA

Function

symbol description
parga Predicted to enable poly(ADP-ribose) glycohydrolase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to several human genes including BPHL (biphenyl hydrolase like).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004649 poly(ADP-ribose) glycohydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070117-757 Predicted to enable poly(ADP-ribose) glycohydrolase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to several human genes including BPHL (biphenyl hydrolase like).

Ensembl:

ensembl_id ENSDARG00000061114

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011929 True 4995 mRNA 0.40 18 29292011 29349324

Neighbor

gene id symbol gene type direction distance location
XLOC_006046 myofl coding upstream 3109 29238850 ~ 29288902 (+)
XLOC_006045 unc5b coding upstream 64208 29127960 ~ 29227803 (+)
XLOC_006042 NA coding upstream 194485 28915538 ~ 29097526 (+)
XLOC_006044 NA coding upstream 208720 29083087 ~ 29083291 (+)
XLOC_006043 CU639469.2 coding upstream 367046 28924846 ~ 28924965 (+)
XLOC_006048 ogdhl coding downstream 3518 29352842 ~ 29406695 (+)
XLOC_006049 NA coding downstream 97493 29446817 ~ 29449721 (+)
XLOC_006050 lrit1a coding downstream 112925 29462249 ~ 29467558 (+)
XLOC_006051 lrit2 coding downstream 121118 29470442 ~ 29474304 (+)
XLOC_006052 chst3a coding downstream 160699 29510023 ~ 29520852 (+)
XLOC_006039 NA non-coding upstream 474129 28808092 ~ 28817882 (+)
XLOC_006037 CU640488.1 non-coding upstream 551642 28740235 ~ 28740369 (+)
XLOC_006053 CT025909.1 non-coding downstream 241670 29590994 ~ 29591115 (+)
XLOC_006054 CT025909.2 non-coding downstream 405969 29755293 ~ 29755427 (+)
XLOC_006056 NA non-coding downstream 539865 29889189 ~ 29891820 (+)
XLOC_006063 AL929330.1 non-coding downstream 902417 30251741 ~ 30251857 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09862141_09892366 PARGA, PARG coding CI01000012 null 9861875 ~ 9892366 (-)