XLOC_006048 (ogdhl)


Basic Information

Item Value
gene id XLOC_006048
gene name ogdhl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29352842 ~ 29406695 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011930
ATAATTGATTTACTCATAGAAAAATTAAACTTTATCAGTCACATGTTGCTGAAAATGTTTTACTTTCTATTCGATGGGTATAATACACTGTAAATCCCCAAAAATTAAGGTAagtcaaaccatttaagttcaaaaactaataaatgaagataactcaaaccagctgagtactgtaaaacccaataagttaaggcaactcaaaactTTTAAAGAAAGCAATTGCTACAATGTTATTCGAGTACTGTGAACTAACTCCAttaaagttgaagtaatgaagtatttaataaactcattaccATCAACACTGAGATTaaaacttttcaaatgagtagaattaacttaaTCCATTTTAAGTTACCTACACTTTTTGCCTTGAATAAATTTGACTGTTgcgttttacagtgtatgtaaagaTCACTATATTTATTAGGCTACAACTCCAGCTATTACATGTACATACTCATTTCATCTCTGATATGCAGGTTTGTTGTATCTGATATATACAGGAGTATTTCCACGGCACATGTATCTTGCATAATTCTACCTAATAACTCAGTGAGTTTGGCTATCTGCCAAAAGCGTTGAGTGTTGGTGTAGCTACTGAACGTTATGCAATAATAACAGCTAGATACTTTTGAAGGATACAATGATGAATAAAGAAACCTAAAGGCACTTTTACACCGGCTGTCATTTGAGATGCTGCAGTTTAGAGTTCAAAGTGTCCTGCTGCAGTGCGCGTGCATGCGGATTAACGAACGGATTTGACGTTGCAGAGAGAATATAGGACACCGAGACCTAAACTCCAGCCTGAATCAAACGACAGACAACATCTGAACTCACGCGAACCATCTTCATCTGCGAGCAGCTCAAGGTTTGCAGACATGAATCAGCTGAGGCCCCTGGCTGGTGCTCTGAGAAGCAGCAGCCAATGGATGAGGGGCCACGTGGGGACAGGGAAGCGAGTGTTTGACCTGCGTCGTAACTGTTCGAGCGGGGTTACTGAGCCCTCATTGGCGGCCTGCAGCTCCAGCTATGTTGTGGAGATGTACTACGCTTGGCTGGAGGATCACAAAAATGTTCATGAGTCTTGGGATGCGTACTTCCGTAACGCTGAAGCCAGCAGTTCTGTGGAGTCTGGAGAGAAGCCTCTGTCCATGCTGCTGCAGGGGCGAACCATGTCCCAGACACCTGCTATGTCAGAGAAGGTTGTGGAGGATCATCTGGCAGTCCATACTCTTATTAGAGCCTATCAGGTACGTGGTCACCATGTAGCTCGACTGGACCCTCTTGGCATTCTTACAGCCGATCTGGATTCCTTCGTTCCTTCAGATTTGATCACATCAATTGACAAACTTGCATCGTATGGCTTGGAAGAATCTGATCTGGATAAATCATTTCAGTTGCCACTAACCACATTTATTGGGGGAAATGAAAACACACTCCCACTGAGAGAAATCATACACAGACTTGAGACATCCTACTGTGGCCATACGGGAGTGGAATTCATGTTTATCAATAATATGGAGCAGTGCCAGTGGATCAGACAAAAATTTGAAACTCCAGGGATCATGAAGTTTTCTGCCCGAGAGAAGAGGACATTGCTGGCCAGGCTGGTTCGCTCAACACGGTTTGAGGACTTCCTTGCTCGCAAATGGTCTTCAGAGAAACGCTTTGGACTGGAAGGCTGTGAGGTCCTCATCCCTGCGCTGAAGATGATCATCGACAAGTCCAGTGAAGCTGGTATAGAAAGTGTAATTATGGGAATGCCTCACAGGGGAAGACTGAACGTTCTGGCCAACGTAGTTCGCAAGGATTTGGATCAAATATTCTGTCAGTTTGATCCCAAACTGGAGGCTGCAGATGAGGGCTCAGGAGATGTGAAATATCACTTGGGGATGTACCATGAACGGATAAACAGGGAAACGGATAAGAATATCACATTGTCACTAATGGCTAACCCATCTCACCTTGAGGCTGTAGATCCTGTCGTTCAGGGCAAGACCAAAGCAGAGCAGTTTTACAGAGGAGACACTGAAGGAAGGAGGGTGATGTCAATTCTCATGCATGGTGATGCTGCGTTTGCCGGTCAGGGAGTCGTCTATGAAACCTTCCATCTCAGTGAACTGCCTTCATATACTACTTATGGCACCATCCATGTGGTTGTCAATAATCAGATTGGATTCACAACTGATCCGCGAATGGCACGGTCATCGCCCTATCCAACAGATGTGGCTCGCGTGGTCAACGCACCCATCTTCCACGTCAACGCTGATGACCCAGAGGCTGTGATGTATGTGTGCAAGATTGCAGCAGAGTGGAGAACCACTTTCAACAAGGATGTGGTGATTGACCTGGTGTGCTACCGTCGGTTTGGACATAATGAGATGGATGAGCCAATGTTCACGCAACCCTTAATGTACAAGCAGATCCGTAAACAAGAACACGTGCTGAAAAAGTACGCCGACAAGCTCATCTCTGAAGGAGTTGTAACGCTGCAAGAGTTTGAGGAGGAGGTTGCTAAATATGACAAGATCTGCGAGGAGGCGTACACCAGCTCCAAAGATGAGAAGATCCTGCATATCCGCCACTGGCTGGACTCTCCATGGCCAGACTTCTTCAAACCAGATGGAGAACCAAAGAGCATGAGCTGCCCTTCCACTGGACTGAGTGAGGAGGTGCTCAAGCACATTGGTGAAGTAGCAAGTTCAGTCCCTCTAAAGGACTTTGCCATTCACAGTGGCTTATCACGTATCCTTCGAGGCCGAGCAGATATGATTACAAAGCGTATGGCGGACTGGGCCCTGGCAGAGTACATGGCATTTGGCTCTTTGTTGAAGGACGGCATTCATGTGAGACTCAGTGGACAAGATGTAGAAAGAGGAACATTTAGTCACCGTCACCATGTCCTGCATGATCAGGAAGTTGATAAGCGCTTCTGTGTCCCGATGAACCACTTGTGGCAGAACCAGGCTCTCTACACAGTGTGCAACAGCTCATTGTCTGAGTATGGGGTTTTAGGTTTTGAACTTGGTTTTGCCATGGCGAATCCTAATGCCCTGGTGTGCTGGGAGGCTCAGTTTGGTGACTTTCACAACACAGCTCAGTGCATCATAGACCAGTTCATCTCTGCAGGACAGGCCAAGTGGGTCCGACACAATGGCATTGTTTTACTCTTGCCCCATGGAATGGAGGGAATGGGCCCGGAGCACTCGTCAGCACGGCCTGAACGCTTCCTGCAGATGAGCAAAGATGACCCCGATCGCTATCCGGAATACACTGGAGACTTTGAGGTCCAGCAGCTCTATGACTGTAATTGGATTGTGGTCAATTGCTCAACACCTGCCAGCTACTTCCATGTGCTTAGGAGGCAAATATTATTACCATTCAGGAAGCCActgATCATTTTTACACCAAAGTCTTTACTGAGGCTGCCTGAGGCCCGCTCCAGTTTTGATGAAATGGTCACAGGGACAAAATTTATCAGGGTAATTCCAGATGATGGCCCTGCATCCAAAAACCCTGAAAAGGTCAAAAGGGTCATCTTCTGCACTGGAAAGGTGTACTATGAGCTAGCcaaagaaagaaaacagctgaAGTTGGAAGAGAATGTTGCAATAGTCCGACTGGAGCAGatATCGCCATTCCCTTTTGACCTCATCAAGGCTGAGGTTGAGAAGTACAGCAATGCTGAACTCATATGGTGTCAGGAGGAGCACAAGAACATGGGCTACTATGATTACATAAGGCCACGTTTCCTCACAGTCcaaccaaagaatccaatatgGTATGTTGGCCGTGACCCTGCTGCAGCCCCAGCCACAGGAAACAAGTTCACACATCTGGCTGAGCTCAAGAGGTTTTTGGACACTGCATTTAACCTCGAGGCTTTCCAGGACAAGAGTTTTTGATGCTGTTGTGTCAGGTGTGAAAATCAGCCCTTAAGATAGAACAGGTATCACTGCTCTGTTGATTAGATAAGGTCATTTTCATGAGATATCCATGTTGCCAATGTATGTAAGATTACAATTACATTGATAAATAGAACACAAGACAGCAAAGAGAATTGTATGTACTCATTCAGATTTATTTGTAGATTTGCACCAGAAATCCTTTATCTGTCTTTAAGtaatcagtatttttattttttttttacaaattgtctTCCATAACTGTCACACTTGGCTTCATCCTGAGACATCAGACAGATGGCATCTAGACAAGTAACGTTATTCTCCGTGGTAGTCCTGATATTCTCTGTAGCTTCCACAAAATATGCTTTATTTTAGACTTTAGGGTTTTAGTGACATTTAAGACTTGTGGGAACGAGGACATTCATAACGTCAACATGTCTGTGACAACTTTGAAATGCTAGTATACACACTGGGAAACAATTAAACGTAAGCTACAAAGCAATTAATTACACAACCCATCTGATAAGCACAAACATCTGAAGCAATATCGTTCTGTTTAATCTTAATGCAGTCAAACTGCTTTTCTATAGAAATTTAGCAACATTTGGTAATGCTATATTATATCACTCTGTGGCTGGATGCTCACACATAGTGAAACCTTGATATTCACACTAGCTGAACTAAATAGCGGTAAACTGTACTTTACACATACTGTGTGGTAGGTTATTCATGTGACACTTGGAATAGggaatttaatgtaaaaaaatagatttGGTTTTAGTATATTATAAACAGGACATTGCTCATGGGAGAAAAAGATCGCTGTGATAGATTGTGATGAACGATAGATGTTTTTCAGCAATAATGCAATAAACTGTGTCACTGACAAACGATGGATGTTTGCGTGGTTATATCATTTGTCATATACCTGTGCACATATACAAGCAGTCTTCTCACAGACAGTGTGCTGCCTTCATATGTACATAGGACCCTACGATAGTACTCATTTCATGGATGCTTTAAAATGCTGTCTAGTTATTTGGCTCACTTTAATTTTAAACATGGTTGAAATAGTACCTTACAACTAGAGGGCACAGTTTAAAGGGAAGCAGTTTGAACAGAAATGTGTAGGAATAGTACATATTGTACACAGCCATACTAGAGTGGCATAAACACATCAAGTCTTTTTCCAAATGCCAGCAATTTTGAGGCCAACTGCACCGTGACATTGTTATCAACACCCCGATATTGATTGACAAGTGCCTATTACTATGTGTCAGTATTGGCAAACAGCATAATGTAATTGTACAGTATAATGCGTAATGTTTTTGTGTGATGCCAAGTATCCCTTATCTTTTGAAGTAGATATGCCCGAACAGAGGGTGGAGAGAACAAGCTCATTTGCATTCAAGGGCAAAAACTTTTTTGTCGCAATTGCGAAATTGTAACTtattcatatttttcttttttacctaAATTATAAGGTTAACATCTTTTCACAGCATTGTGAATTACCGTATAAGTGATATATCAGTATACAGTATAACTGAATTCATCAGATTTTTTGATACAGCTCTGACTTTTTCGCAAAtgtgataaatataataagaattttttttttctcagaacgGCGTGAAATAAAATTTGAATTGTGAGAAATACAATCTGAATTGCTTTCTCTGTGACTTTTTTTTCACAGAATCATAAAAAAATTAGTTTACAGTATGAGATCAAAACTGCATGATATAAAATTTCAGATCTCTTgagaaataaaatactaaaacttattctacaataaaataatttatgactaatttatccgaattgcaagatataaactcTGAATCACAAATTGTGTGAGAATGAAACTCATAATTACAGTTGCTTTTTATTCCTCCAAAACGGTCCTTTATGGTATACAGTGTATACCGTTCAGTATTCGGCAATAGAAGTCTATGCTATTGCTAACTTTAATTTGAAACGGGTACGGTGTTCAGTACGCCTCCCTCACCGCGTCAATGGCCTCCTGGCACAGCGGATCAAGGCGTCCATCACCCCCTATGAACAAATGAGTTTGACATCATCACATCTCTTATCACCCAGAAATGCAGAGGTTTCCGAATGCTGACGCAATTTACCAAATACAAGGTCAGTGATGTTGCATGTATACACGCGCTCTCCATTCACAATGAGCTCAACTGTATTCCAGTCATCTGTTTTCTCGAGGACATACCGGTGACCGTCGCCTTTGAGCACCGCTGAAGTGAAGGGGAAAGGCAAAATACACTTAGTTTCTGTCAGAGTCCAGTTATTGTGATTAAAAACTAACTTTTTGGGGGAAAATGTAACAAAGCTTTCGACAAGATTACCTTGTAAGCCGTCCAGGCGAAACGTTCTGTGATCGACAATTCCACACGAATCGTATGGACCGTACCTTATTGTTACTATTGAATTAGTTGgcataattataaataacagacTATTACAAATCCCTCCGAATGTCACAATACAAGGCTGTCAACACTGCATTTTTGTGTACACCACTCTCCATAGTAACCAATGGGAGGATTGAAACATGTAAACAGGAAGCTGGAAATAGTGCATCAGGCaagtatgtttttatatttagcaATGCTTAAATTCCCTGTTTAAGTGTTACTTTAAATCACATTGTTACTTCAGTAAAATTCGTATAATCTTaatattca

Function

symbol description
ogdhl Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Predicted to act upstream of or within tricarboxylic acid cycle. Orthologous to human OGDHL (oxoglutarate dehydrogenase L).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111201-4 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Predicted to act upstream of or within tricarboxylic acid cycle. Orthologous to human OGDHL (oxoglutarate dehydrogenase L).

Ensembl:

ensembl_id ENSDARG00000079249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011930 True 6619 mRNA 0.42 23 29352842 29406695

Neighbor

gene id symbol gene type direction distance location
XLOC_006047 parga coding upstream 3518 29292011 ~ 29349324 (+)
XLOC_006046 myofl coding upstream 63940 29238850 ~ 29288902 (+)
XLOC_006045 unc5b coding upstream 125039 29127960 ~ 29227803 (+)
XLOC_006042 NA coding upstream 255316 28915538 ~ 29097526 (+)
XLOC_006049 NA coding downstream 40122 29446817 ~ 29449721 (+)
XLOC_006050 lrit1a coding downstream 55554 29462249 ~ 29467558 (+)
XLOC_006051 lrit2 coding downstream 63747 29470442 ~ 29474304 (+)
XLOC_006052 chst3a coding downstream 103328 29510023 ~ 29520852 (+)
XLOC_006053 CT025909.1 coding downstream 184299 29590994 ~ 29591115 (+)
XLOC_006044 NA non-coding upstream 269551 29083087 ~ 29083291 (+)
XLOC_006043 CU639469.2 non-coding upstream 427877 28924846 ~ 28924965 (+)
XLOC_006039 NA non-coding upstream 534960 28808092 ~ 28817882 (+)
XLOC_006037 CU640488.1 non-coding upstream 612473 28740235 ~ 28740369 (+)
XLOC_006054 CT025909.2 non-coding downstream 348598 29755293 ~ 29755427 (+)
XLOC_006056 NA non-coding downstream 482494 29889189 ~ 29891820 (+)
XLOC_006063 AL929330.1 non-coding downstream 845046 30251741 ~ 30251857 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09830411_09851586 OGDHL coding CI01000012 null 9830165 ~ 9851870 (-)