XLOC_006057 (cuedc2)


Basic Information

Item Value
gene id XLOC_006057
gene name cuedc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29925397 ~ 29936259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011950
AATCAAAACAGTGACACGAGGGTGTGTTTACATTAAAGCGGACGTGACGTCGTAGGTTTTGAACCTCAGCGACCGCGCGTAGGGCTAATGAATTAGCTAAACGTTTTACGATTTATTGTCAGCTTGCCAACACAGGCTGTCGATTTGTACATCAGGATTTTTTAAATTCTTGTTTTCCATCAGTGCGGTTTCATCCAGAGGCAGGATGGATCTCCAAAAAATAATCCACGACGCGCTGTACGACTTCATTTTGTCATATATTCCTCACGCCGATCTGAGTACTCTGGATGATGTCATTCTGTCTTACATCACCGGGGTGCTGGAAGATTTGGGGTCTCAAGAAAGTGTCGAGGAAAACTTTGATGTAGAGGTGTTTGTTGAAATGCTGGAGGCCTACATCCCTGGTTTCTCTGATATCGACAGTGTCAAAGTTTGCGAGATGATGTTTAATCTGGCAGCGAAGTTGACTTCAGCCAGGGACACAGAATCAGGAGAGATGAAAATCGAGGAAGGTAAATTTCCCCTCTCAGAAAGCTGTGATTTATCCCTCGGCGGTTCCAGAGAGAAGACACACAACCTTACTTTACAAGCAGAGGGAGCCACAGCTCAGGTTAGTGAATCTTCATGGGATAACCAGGAGCAACATCTTCTTGAGATGTTTCCTAAATGCAGTGTGACTGAGGCCAGAAGTGCATTGTCCATTGCTAAAGGAGACATGGAGGAAGCCGTTCGTCTCATTATTGAGGGAGATGTCCAGCTTAAGTGCCCTCCGTCTCTCAGTGCAAACCAGGGGAAGACAGTCTCTgctgaagtggatcaaaaacttAAAGCAAGCATTTTAGAAAAATACATGCTGGTTGATGATGAGGAAGACAAGAAAGTACACCGACCTGTCACTCCAAAAGATGCCCCTAAGAAAATGGTGCGCTATCACGGCAGTCAAGTGGTCACTACGAAGGGAGAGCGTTATCATCTAGTCAAGAAAGAAGAACCAGAAGACATGAAGAAGACTTACGTCAGCCTAAAACCAGCCCGCAAATACCGCTTCCATTGATGAAAGGCATCTTATTGATGGACCGTTCAGAATACTCCCTTCTTTTGTGTCTGGATCTCTGTGACTGGAAACAAacgatttagtttttatttaaacgtATCTCGTCCAAATGTCTCCATTGTAATATACGGTGCTGGAgggtttattttgttgttgtttgggtTGATGTCTTGTGTGATCTCCTAGCAGGTCTCTTTTTTCGAGCCCTTTtaagttactgtatttatttttttaaactactttttaCTAAAACCTTAAGCTCtaccttaaaaaaaacatgaaggtGTTTACATTTGACTGTTTAATTTATGCCAAAtccatttttattcataattacaagTCAAACAAGCTGGTTGCTTTGTTATAAAAtcagccaatttagctcatctCCAGTGAGACGTCAGTGTTTGTACTTTGCATTCTGTGTTTATTTTCATATGCAGAAATAAGACTCCATATATGTTCCTACAGAAGCTAAAGAATAGCAGGGTCTGTgtgacaggtttttttttttctttgatgcaGTTCACAAAACAGGTCTGCCTGGTAAAATTGACCCTG
>TCONS_00011951
CACGCTGTTGCGGTATAATTGTCGTGTTAGTTTGGTTTGACAATGTACTTACCTCTCACGTGGATCTCTGACCAACTGTTACTCCCTGTTGTTGACTCTTCTCGTTTTTTTATCCAAATGCAGGCAGGATGGATCTCCAAAAAATAATCCACGACGCGCTGTACGACTTCATTTTGTCATATATTCCTCACGCCGATCTGAGTACTCTGGATGATGTCATTCTGTCTTACATCACCGGGGTGCTGGAAGATTTGGGGTCTCAAGAAAGTGTCGAGGAAAACTTTGATGTAGAGGTGTTTGTTGAAATGCTGGAGGCCTACATCCCTGGTTTCTCTGATATCGACAGTGTCAAAGTTTGCGAGATGATGTTTAATCTGGCAGCGAAGTTGACTTCAGCCAGGGACACAGAATCAGGAGAGATGAAAATCGAGGAAGGTAAATTTCCCCTCTCAGAAAGCTGTGATTTATCCCTCGGCGGTTCCAGAGAGAAGACACACAACCTTACTTTACAAGCAGAGGGAGCCACAGCTCAGGTTAGTGAATCTTCATGGGATAACCAGGAGCAACATCTTCTTGAGATGTTTCCTAAATGCAGTGTGACTGAGGCCAGAAGTGCATTGTCCATTGCTAAAGGAGACATGGAGGAAGCCGTTCGTCTCATTATTGAGGGAGATGTCCAGCTTAAGTGCCCTCCGTCTCTCAGTGCAAACCAGGGGAAGACAGTCTCTgctgaagtggatcaaaaacttAAAGCAAGCATTTTAGAAAAATACATGCTGGTTGATGATGAGGAAGACAAGAAAGTACACCGACCTGTCACTCCAAAAGATGCCCCTAAGAAAATGGTGCGCTATCACGGCAGTCAAGTGGTCACTACGAAGGGAGAGCGTTATCATCTAGTCAAGAAAGAAGAACCAGAAGACATGAAGAAGACTTACGTCAGCCTAAAACCAGCCCGCAAATACCGCTTCCATTGATGAAAGGCATCTTATTGATGGACCGTTCAGAATACTCCCTTCTTTTGTGTCTGGATCTCTGTGACTGGAAACAAacgatttagtttttatttaaacgtATCTCGTCCAAATGTCTCCATTGTAATATACGGTGCTGGAgggtttattttgttgttgtttgggtTGATGTCTTGTGTGATCTCCTAGCAGGTCTCTTTTTTCGAGCCCTTTtaagttactgtatttatttttttaaactactttttaCTAAAACCTTAAGCTCtaccttaaaaaaaacatgaaggtGTTTACATTTGACTGTTTAATTTATGCCAAAtccatttttattcataattacaagTCAAACAAGCTGGTTGCTTTGTTATAAAAtcagccaatttagctcatctCCAGTGAGACGTCAGTGTTTGTACTTTGCATTCTGTGTTTATTTTCATATGCAGAAATAAGACTCCATATATGTTCCTACAGAAGCTAAAGAATAGCAGGGTCTGTgtgacaggtttttttttttctttgatgcaGTTCACAAAACAGGTCTGCCTGGTAAAATTGACCCTGGAGAAGACCTTTCACCTCCATATTTACTAGTTAGTTTCTCTGTAATGTGTAGCTAGCTGGCTTTCCGTAGTTTTAGTAAAGAATGTACTTTTGTGTTCATTATTGAATTACCATATTCACATTACACCAGTGTTTTTCAGAGATGGTTTGTTTGTGCTTGATGTACTCCATTTTTACATGTTGTCTTTGGTGTAGAGCAACAGTATTGGCTGTCAGCATTATCGTCACCTCCGACATGACCCTGAAACTGAAGTGCAGTGATTAGATTgaaatatattaacattatttttaaaggaCTGATGTTTTTGAGAGTAACTAGTAAAGAATTAATGTTTTATGAA
>TCONS_00011952
AAAGGTTTTTCCGTTATTTTGTGTGTGGAAAAATAAcgtctgttttgtttaaaacagTACTCTGGATGATGTCATTCTGTCTTACATCACCGGGGTGCTGGAAGATTTGGGGTCTCAAGAAAGTGTCGAGGAAAACTTTGATGTAGAGGTGTTTGTTGAAATGCTGGAGGCCTACATCCCTGGTTTCTCTGATATCGACAGTGTCAAAGTTTGCGAGATGATGTTTAATCTGGCAGCGAAGTTGACTTCAGCCAGGGACACAGAATCAGGAGAGATGAAAATCGAGGAAGGTAAATTTCCCCTCTCAGAAAGCTGTGATTTATCCCTCGGCGGTTCCAGAGAGAAGACACACAACCTTACTTTACAAGCAGAGGGAGCCACAGCTCAGGTTAGTGAATCTTCATGGGATAACCAGGAGCAACATCTTCTTGAGATGTTTCCTAAATGCAGTGTGACTGAGGCCAGAAGTGCATTGTCCATTGCTAAAGGAGACATGGAGGAAGCCGTTCGTCTCATTATTGAGGGAGATGTCCAGCTTAAGTGCCCTCCGTCTCTCAGTGCAAACCAGGGGAAGACAGTCTCTgctgaagtggatcaaaaacttAAAGCAAGCATTTTAGAAAAATACATGCTGGTTGATGATGAGGAAGACAAGAAAGTACACCGACCTGTCACTCCAAAAGATGCCCCTAAGAAAATGGTGCGCTATCACGGCAGTCAAGTGGTCACTACGAAGGGAGAGCGTTATCATCTAGTCAAGAAAGAAGAACCAGAAGACATGAAGAAGACTTACGTCAGCCTAAAACCAGCCCGCAAATACCGCTTCCATTGATGAAAGGCATCTTATTGATGGACCGTTCAGAATACTCCCTTCTTTTGTGTCTGGATCTCTGTGACTGGAAACAAacgatttagtttttatttaaac
>TCONS_00011953
AAAGTTTGCGAGATGATGTTTAATCTGGCAGCGAAGTTGACTTCAGCCAGGGACACAGAAAGCTGTGATTTATCCCTCGGCGGTTCCAGAGAGAAGACACACAACCTTACTTTACAAGCAGAGGGAGCCACAGCTCAGGTTAGTGAATCTTCATGGGATAACCAGGAGCAACATCTTCTTGAGATGTTTCCTAAATGCAGTGTGACTGAGGCCAGAAGTGCATTGTCCATTGCTAAAGGAGACATGGAGGAAGCCGTTCGTCTCATTATTGAGGGAGATGTCCAGCTTAAGTGCCCTCCGTCTCTCAGTGCAAACCAGGGGAAGACAGTCTCTgctgaagtggatcaaaaacttAAAGCAAGCATTTTAGAAAAATACATGCTGGTTGATGATGAGGAAGACAAGAAAGTACACCGACCTGTCACTCCAAAAGATGCCCCTAAGAAAATGGTGCGCTATCACGGCAGTCAAGTGGTCACTACGAAGGGAGAGCGTTATCATCTAGTCAAGAAAGAAGAACCAGAAGACATGAAGAAGACTTACGTCAGCCTAAAACCAGCCCGCAAATACCGCTTCCATTGATGAAAGGCATCTTATTGATGGACCGTTCAGAATACTCCCTTCTTTTGTGTCTGGATCTCTGTGACTGGAAACAAacgatttagtttttatttaaacgtATCTCGTCCAAATGTCTCCATTGTAATATACGGTGCTGGAgggtttattttgttgttgtttgggtTGATGTCTTGTGTGATCTCCTAGCAGGTCTCTTTTTTCGAGCCCTTTtaagttactgtatttatttttttaaactactttttaCTAAAACCTTAAGCTCtaccttaaaaaaaacatgaaggtGTTTACATTTGACTGTTTAATTTATGCCAAAtccatttttattcataattacaagTCAAACAAGCTGGTTGC

Function

symbol description
cuedc2 Predicted to be located in cytoplasm and nucleus. Orthologous to human CUEDC2 (CUE domain containing 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6283 Predicted to be located in cytoplasm and nucleus. Orthologous to human CUEDC2 (CUE domain containing 2).

Ensembl:

ensembl_id ENSDARG00000039365

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011950 False 1615 mRNA 0.42 9 29925397 29935918
TCONS_00011951 False 1879 mRNA 0.40 8 29926094 29936259
TCONS_00011952 False 928 mRNA 0.44 7 29926326 29935453
TCONS_00011953 True 939 mRNA 0.42 6 29926631 29935714

Neighbor

gene id symbol gene type direction distance location
XLOC_006056 NA coding upstream 33577 29889189 ~ 29891820 (+)
XLOC_006055 pax2a coding upstream 119868 29770837 ~ 29805529 (+)
XLOC_006054 CT025909.2 coding upstream 169970 29755293 ~ 29755427 (+)
XLOC_006053 CT025909.1 coding upstream 334282 29590994 ~ 29591115 (+)
XLOC_006052 chst3a coding upstream 404545 29510023 ~ 29520852 (+)
XLOC_006058 dnajb12a coding downstream 98994 30035253 ~ 30046753 (+)
XLOC_006059 spock2 coding downstream 118737 30054996 ~ 30132256 (+)
XLOC_006060 eif4ebp2 coding downstream 227256 30163515 ~ 30168897 (+)
XLOC_006061 pald1b coding downstream 232974 30169233 ~ 30214368 (+)
XLOC_006062 qrfpra coding downstream 279506 30215765 ~ 30235220 (+)
XLOC_006049 NA non-coding upstream 475676 29446817 ~ 29449721 (+)
XLOC_006044 NA non-coding upstream 842106 29083087 ~ 29083291 (+)
XLOC_006063 AL929330.1 non-coding downstream 315482 30251741 ~ 30251857 (+)
XLOC_006065 AL844152.1 non-coding downstream 575348 30511607 ~ 30511723 (+)
XLOC_006067 NA non-coding downstream 740566 30676825 ~ 30677643 (+)
XLOC_006071 CR762493.1 non-coding downstream 900397 30836656 ~ 30836776 (+)
XLOC_006074 NA non-coding downstream 984295 30920554 ~ 30928661 (+)

Expression


Co-expression Network