RNA id: TCONS_00011951


Basic Information

Item Value
RNA id TCONS_00011951
length 1879
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_006057
representative False

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29925397 ~ 29936259 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGCTGTTGCGGTATAATTGTCGTGTTAGTTTGGTTTGACAATGTACTTACCTCTCACGTGGATCTCTGACCAACTGTTACTCCCTGTTGTTGACTCTTCTCGTTTTTTTATCCAAATGCAGGCAGGATGGATCTCCAAAAAATAATCCACGACGCGCTGTACGACTTCATTTTGTCATATATTCCTCACGCCGATCTGAGTACTCTGGATGATGTCATTCTGTCTTACATCACCGGGGTGCTGGAAGATTTGGGGTCTCAAGAAAGTGTCGAGGAAAACTTTGATGTAGAGGTGTTTGTTGAAATGCTGGAGGCCTACATCCCTGGTTTCTCTGATATCGACAGTGTCAAAGTTTGCGAGATGATGTTTAATCTGGCAGCGAAGTTGACTTCAGCCAGGGACACAGAATCAGGAGAGATGAAAATCGAGGAAGGTAAATTTCCCCTCTCAGAAAGCTGTGATTTATCCCTCGGCGGTTCCAGAGAGAAGACACACAACCTTACTTTACAAGCAGAGGGAGCCACAGCTCAGGTTAGTGAATCTTCATGGGATAACCAGGAGCAACATCTTCTTGAGATGTTTCCTAAATGCAGTGTGACTGAGGCCAGAAGTGCATTGTCCATTGCTAAAGGAGACATGGAGGAAGCCGTTCGTCTCATTATTGAGGGAGATGTCCAGCTTAAGTGCCCTCCGTCTCTCAGTGCAAACCAGGGGAAGACAGTCTCTgctgaagtggatcaaaaacttAAAGCAAGCATTTTAGAAAAATACATGCTGGTTGATGATGAGGAAGACAAGAAAGTACACCGACCTGTCACTCCAAAAGATGCCCCTAAGAAAATGGTGCGCTATCACGGCAGTCAAGTGGTCACTACGAAGGGAGAGCGTTATCATCTAGTCAAGAAAGAAGAACCAGAAGACATGAAGAAGACTTACGTCAGCCTAAAACCAGCCCGCAAATACCGCTTCCATTGATGAAAGGCATCTTATTGATGGACCGTTCAGAATACTCCCTTCTTTTGTGTCTGGATCTCTGTGACTGGAAACAAacgatttagtttttatttaaacgtATCTCGTCCAAATGTCTCCATTGTAATATACGGTGCTGGAgggtttattttgttgttgtttgggtTGATGTCTTGTGTGATCTCCTAGCAGGTCTCTTTTTTCGAGCCCTTTtaagttactgtatttatttttttaaactactttttaCTAAAACCTTAAGCTCtaccttaaaaaaaacatgaaggtGTTTACATTTGACTGTTTAATTTATGCCAAAtccatttttattcataattacaagTCAAACAAGCTGGTTGCTTTGTTATAAAAtcagccaatttagctcatctCCAGTGAGACGTCAGTGTTTGTACTTTGCATTCTGTGTTTATTTTCATATGCAGAAATAAGACTCCATATATGTTCCTACAGAAGCTAAAGAATAGCAGGGTCTGTgtgacaggtttttttttttctttgatgcaGTTCACAAAACAGGTCTGCCTGGTAAAATTGACCCTGGAGAAGACCTTTCACCTCCATATTTACTAGTTAGTTTCTCTGTAATGTGTAGCTAGCTGGCTTTCCGTAGTTTTAGTAAAGAATGTACTTTTGTGTTCATTATTGAATTACCATATTCACATTACACCAGTGTTTTTCAGAGATGGTTTGTTTGTGCTTGATGTACTCCATTTTTACATGTTGTCTTTGGTGTAGAGCAACAGTATTGGCTGTCAGCATTATCGTCACCTCCGACATGACCCTGAAACTGAAGTGCAGTGATTAGATTgaaatatattaacattatttttaaaggaCTGATGTTTTTGAGAGTAACTAGTAAAGAATTAATGTTTTATGAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6283 Predicted to be located in cytoplasm and nucleus. Orthologous to human CUEDC2 (CUE domain containing 2).

Ensembl:

ensembl_id ENSDART00000057528

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013407 lncRNA upstream 34274 29889189 ~ 29891820 (+) True XLOC_006056
TCONS_00013625 lncRNA upstream 476373 29446817 ~ 29449721 (+) True XLOC_006049
TCONS_00013406 lncRNA upstream 842803 29083087 ~ 29083291 (+) True XLOC_006044
TCONS_00013624 lncRNA upstream 874918 28915553 ~ 29051176 (+) False XLOC_006042
TCONS_00011972 lncRNA downstream 291842 30228101 ~ 30233680 (+) False XLOC_006062
TCONS_00011974 lncRNA downstream 291862 30228121 ~ 30230350 (+) True XLOC_006062
TCONS_00013626 lncRNA downstream 740566 30676825 ~ 30677643 (+) True XLOC_006067
TCONS_00013627 lncRNA downstream 984295 30920554 ~ 30928661 (+) True XLOC_006074
TCONS_00011994 lncRNA downstream 1015008 30951267 ~ 30955038 (+) True XLOC_006075
TCONS_00011943 mRNA upstream 120565 29771463 ~ 29805529 (+) False XLOC_006055
TCONS_00011942 mRNA upstream 120565 29771463 ~ 29805529 (+) False XLOC_006055
TCONS_00011941 mRNA upstream 120565 29771463 ~ 29805529 (+) False XLOC_006055
TCONS_00011949 mRNA upstream 123307 29778610 ~ 29802787 (+) True XLOC_006055
TCONS_00011939 mRNA upstream 123578 29771463 ~ 29802516 (+) False XLOC_006055
TCONS_00011954 mRNA downstream 98994 30035253 ~ 30046753 (+) False XLOC_006058
TCONS_00011955 mRNA downstream 99105 30035364 ~ 30044395 (+) False XLOC_006058
TCONS_00011956 mRNA downstream 99183 30035442 ~ 30043337 (+) True XLOC_006058
TCONS_00011957 mRNA downstream 118737 30054996 ~ 30131450 (+) False XLOC_006059
TCONS_00011958 mRNA downstream 118737 30054996 ~ 30132256 (+) False XLOC_006059
TCONS_00011948 other upstream 140073 29778337 ~ 29786021 (+) False XLOC_006055
TCONS_00011936 other upstream 170667 29755293 ~ 29755427 (+) True XLOC_006054
TCONS_00011935 other upstream 334979 29590994 ~ 29591115 (+) True XLOC_006053
TCONS_00011924 other upstream 1001129 28924846 ~ 28924965 (+) True XLOC_006043
TCONS_00011911 other upstream 1185725 28740235 ~ 28740369 (+) True XLOC_006037
TCONS_00011975 other downstream 315482 30251741 ~ 30251857 (+) True XLOC_006063
TCONS_00011978 other downstream 575348 30511607 ~ 30511723 (+) True XLOC_006065
TCONS_00011984 other downstream 900397 30836656 ~ 30836776 (+) True XLOC_006071
TCONS_00012034 other downstream 1833562 31769821 ~ 31777526 (+) True XLOC_006100
TCONS_00012037 other downstream 2456124 32392383 ~ 32392499 (+) True XLOC_006105

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_09513757_09517777.mRNA True 1217 mRNA 0.40 6 CI01000012 9513268 ~ 9517777 (-)