G155484


Basic Information

Item Value
gene id G155484
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1228051 ~ 1239373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210836
ttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttaaaacagtattttaacatAACATGTACGTGATCGTATAGCTTGTTTTTCTCATAAAAACATATTCAAAAATTTACAGaggaaagcattttttttatcttatagcACAACAGCATtagaaaaattaattaattaataacatatttagaaatatttaaagaacatCTTTGGAGGGAAAGTCTAGGGAGCAACATACCTGAAAcagattaaatcaaataatcCTTCACGTCTTGCAATGAACGGCTGCAGGTATAGCACACTGAggttgtaaaaagtaaaataagataaaaagggATTAGCTTAATTCACATTTTACTTTAGAGACATGATTATATAATGCGGCCCGCACGTGCGGAGCACATGTCTAGACTAAACTCGATAAAGTTAACATTTCTTATcaaaactttataataaatagagcactagatatttttataaagttatagaacagtgtttttaaagtttttaactagataaagattagaaaatatatattttagagagAAACTGCAGCAGCTACGAACCATCCATCTCAGAGCTCTCACTCGTCTGATGGAGGTAcggcagcagcagagggacACAGCCTGCAGGGACGTCAAAGCAAGAAATGAAAAGctcccaaaaatatatttaacctttttttttacaaaaatataaactttcacaaaaaaatgaactttttagactttttttacccatttttatAATAGTAGAGCAATTTTGGTGAAACTCACTAATTATATTATCTGGTAATTCTAACTCTGTTACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210836 True 910 lncRNA 0.26 2 1228051 1239373

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 275571 927719 ~ 952480 (+)
sertad3 NA coding upstream 509346 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 515030 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 546148 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 664275 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 176034 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 327742 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 413281 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 423605 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 453225 1692598 ~ 1905714 (+)
G155487 NA non-coding upstream 60028 1160509 ~ 1168023 (+)
G155478 NA non-coding upstream 79129 1139974 ~ 1148922 (+)
G155455 NA non-coding upstream 114451 1108498 ~ 1113600 (+)
G155457 NA non-coding upstream 193598 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 311811 914396 ~ 916240 (+)
G155507 NA non-coding downstream 10611 1249984 ~ 1338723 (+)
G155514 NA non-coding downstream 22680 1262053 ~ 1263683 (+)
G155490 NA non-coding downstream 57922 1297295 ~ 1346004 (+)
G155573 polr2i,rpb9 non-coding downstream 118577 1357950 ~ 1361894 (+)
G155579 NA non-coding downstream 125627 1365000 ~ 1371912 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 4701 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 121259 1103450 ~ 1106792 (+)
G155206 NA other upstream 1074788 149347 ~ 153263 (+)
G155776 NA other downstream 1498988 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2371645 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2689958 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3336295 4575668 ~ 4637290 (+)
G156188 NA other downstream 3917781 5157154 ~ 5157400 (+)

Expression


Co-expression Network