LOC103025196 (arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020)


Basic Information

Item Value
gene id LOC103025196
gene name arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3929331 ~ 3932163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211520
aactaTGGAACCTGAAATGATTGAGAAACTGAACACTGAGGAAGACTTAACGTTATGTGACGAAGGGCTGGTCCCTTTTTTTGCTGCTGTCAGTCCCCCTCCATAAACAAGTAGCCTCGTTGTCACACTGAAAATGGACTGAAGGAGTTCTCCTATTTAAGCACTGTGAAAAAACTACAACGCTGCAGTTTTGGTTCATGgaatgcttgatttttttttcttaatttttttttttacagtcctgTAAAGGCGTATATACTGTgtgcatcacaaaaaaaaacaatcctccATGGAAACAGCTCCAGTTGACTGATGTGAGCATAAgtgtgaatgtgagtgtgtCAGAGTGAGActgtgtttacacctggtcacatcatgtgactagtatctggattggatcctgataagattttaaccacattcatttacatttaatagactAATGCTTCTCCAGTTAGACTAAAATCTGATTGCTGTGTGGGAAGAAATATCAACATTTGGAAGTGGTTTTATTGATCTgatttgcatctgttttaaatgagtcTCACACCACCTTCTGAAGTAGTTTTAGTAATCGGATTTGTATCTTTTTAAGTTAGTCTCAAACCACCTTCTGATGTGGTTTTAGTGATTgggtttgtatttgttttaaattggtCTCAGACCATTTGCTGAAGTACTTTGAGTGATCtaatttttatctcttttaaatGCACCTCAGATCAACTTCCTAGGTGGATTgatgtaaatttaaaattaatctcAGCTGACCTCCTGAAGTGGAttaagtgatcagatttgtatccaTTTTAAATGagtctcagaccatcttctgAACTAGTTTTAGTGATCAGAAttgtatctattttaaatgCAGACTGGATGCTTTTACATTTTGGATGCATTTTTGTGTGGCTTGTTCTTATCCAGATACaatcctgatactcaagatgcatgaattgaTCAGGTGTGAACGGGGTGTGAGAGTGAATGTGAGAAGCTAATGGTGGATAGGTGGGTGCATGGATGCTGCAGTTCAGGCCTGCATAAGAGATAGCAGATAGTGTTGGGTACGTAAAAAAGTCTCATCCAAGCGCATGGACTTTGGTGGTGTACACGCCCAGGCTTCTTATGAAGACATTAAAAGAACACTAGATGTGGTGGACGATGTCCCTCCCACATCCATATGCTTGCAACGTGATCCACCACTTAGCACTTTTTTCTTACCAAAACAGTAGAGTTCAACACTGTATTGCAAAAATCAGATTATTGTATTACGCAAAGGTGAATCCTGAAGtatttttcaattaaaatgtaaacagaAA
>XM_007232420.3
AACGCAGAGCTCGCGACGTCCTCCTGAGCACTCGCTGTGTACTGAGCGCACGGAACGGTACGCGCAGATCGGAGCTCACGGAGAAGAGCGCGCGCGACCGACCGACCGACCCAACCCGACCCTGCCCTTCACTGCGGAGACGCAGCGCGCGGACGGTGAACGCGGACTACCAGCATGTGAATTGCACACGTGTGCGTGAGACGACTGCTGCTGCGGGGTCTGGATTGTGTGGATCGTCGGTGAGGACAACGCGACTGCTGCGTTCTGCTGTACCCGACGGGCTGGAAAACAAGCCAGAGCTGGGTGGGGGGGAGATGTGTCGCAATGGCATTTTAAGGTGGTCGTGTGGAGAATGCTAATGTGAGCCTTGGTTCTGGGTGGCCTTGCCTCACTGCGGCATTGGAACAGCACCATCAATTCCACACCCCAGAGGAATAATAATAAGGACGCGCGGTGTAGACTGCATCGTGTAGACTGGACTAGAGAGGTTTGTACGGGTAACATCATAACAAGCCTCTGCCTGCCTTATTTATGACTGCCTCCAGGGCAGTCCCTGCTAATTGAAGGGCTGCTGGCCTGCTAAATCCAGCCCTGCCTCAAGAAAACGAAgccaaatattaatttccaaAATGGGCAACAGCTTTTCGAACATATCAGCGTTCCAGTCTCTCCACATTGTCATGCTCGGCCTAGACTCGGCTGGCAAGACCACCGTGCTGTACAGGCTCAAGTTCAACGAGTTCGTCAACACCGTGCCCACCATCGGCTTCAACACCGAGAAGATCAAGTTGAGCAACGGTGCCGCCAAGGGCATCAGCTGCCACTTCTGGGATGTGGGTGGCCAGGAGAAGCTGCGACCCCTCTGGAAGTCATACAGTCGCTGCACGGATGGCATCATCTACGTGGTGGACTCTGTGGATGTGGATCGCCTGGAGGAGGCTAAGACGGAGTTGCACAAGGTGACCAAGTTTGCGGAGAACCAGGGCACGCCATTGTTGGTCATCGCCAACAAGCAGGACCTGCCCAGGTCTCTACCAGTGGCCGACATCGAGAAGCAGTTGGCACTGAGTGAACTAACACCATCAACCTCGTACCACGTGCAGCCAGCTTGTGCCATTATTGGCGAGGGTCTGCACGAGGGCATGGACAAGTTATATGAAATGATCGTGAAGCGGCGGAAGGCCCtcaagcagaagaagaagcgaTAACAGCTGAGGACTACTGTGGGACCTTACTTTGGGTTGGGAACCCTTCATCTGGCCCTTCCCTTCCAATCATACCTTTCCCTCCTTCCCTTCACCCACCCTCTTCTTGATCATGCCTTTATTTGTGCTTGTAGCCCTTGGGTAGCCTCTTGGGTAGGCCAGTGTTGGCCATGCAACATTGCACTGGTGACTGGTGACCTTGTTGacgttgggggggggggggtgcttaCTCTTCGCTTTGTGTCGATGGCTTGAGAGGGGAACGCATGGCTCGAGCCACGacaaaaaccccaaaaaaactaTGGAACCTGAAATGATTGAGAAACTGAACACTGAGGAAGACTTAACGTTATGTGACGAAGGGCTGGTCCCTTTTTTTGCTGCTGTCAGTCCCCCTCCATAAACAAGTAGCCTCGTTGTCACACTGAAAATGGACTGAAGGAGTTCTCCTATTTAAGCACTGTGAAAAAACTACAACGCTGCAGTTTTGGTTCATGgaatgcttgatttttttttcttaatttttttttttacagtcctgTAAAGGCGTATATACTGTgtgcatcacaaaaaaaaacaatcctccATGGAAACAGCTCCAGTTGACTGATGTGAGCATAAgtgtgaatgtgagtgtgtCAGAGTGAGActgtgtttacacctggtcacatcatgtgactagtatctggattggatcctgataagattttaaccacattcatttacatttaatagactAATGCTTCTCCAGTTAGACTAAAATCTGATTGCTGTGTGGGAAGAAATATCAACATTTGGAAGTGGTTTTATTGATCTgatttgcatctgttttaaatgagtcTCACACCACCTTCTGAAGTAGTTTTAGTAATCGGATTTGTATCTTTTTAAGTTAGTCTCAAACCACCTTCTGATGTGGTTTTAGTGATTgggtttgtatttgttttaaattggtCTCAGACCATTTGCTGAAGTACTTTGAGTGATCtaatttttatctcttttaaatGCACCTCAGATCAACTTCCTAGGTGGATTgatgtaaatttaaaattaatctcAGCTGACCTCCTGAAGTGGAttaagtgatcagatttgtatccaTTTTAAATGagtctcagaccatcttctgAACTAGTTTTAGTGATCAGAAttgtatctattttaaatgCAGACTGGATGCTTTTACATTTTGGATGCATTTTTGTGTGGCTTGTTCTTATCCAGATACaatcctgatactcaagatgcatgaattgaTCAGGTGTGAACGGGGTGTGAGAGTGAATGTGAGAAGCTAATGGTGGATAGGTGGGTGCATGGATGCTGCAGTTCAGGCCTGCATAAGAGATAGCAGATAGTGTTGGGTACGTAAAAAAGTCTCATCCAAGCGCATGGACTTTGGTGGTGTACACGCCCAGGCTTCTTATGAAGACATTAAAAGAACACTAGATGTGGTGGACGATGTCCCTCCCACATCCATATGCTTGCAACGTGATCCACCACTTAGCACTTTTTTCTTACCAAAACAGTAGAGTTCAACACTGTATTGCAAAAATCAGATTATTGTATTACGCAAAGGTGAATCCTGAAGtatttttcaattaaaatgtaaacagaAACTGGTT

Function

symbol description
arl4c Enables alpha-tubulin binding activity. Involved in endocytic recycling. Located in cytosol and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU211520 False 1325 lncRNA 0.38 1 3930833 3932157
XM_007232420.3 True 2833 mRNA 0.47 1 3929331 3932163

Neighbor

gene id symbol gene type direction distance location
LOC103025504 LOC108425960,LOC108266765 coding upstream 30116 3858506 ~ 3899215 (+)
ndufa10 NA coding upstream 965780 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 991261 2882827 ~ 2938070 (+)
parp9 NA coding upstream 1122577 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 1208372 2671503 ~ 2720959 (+)
LOC103036562 hipk3 coding downstream 45589 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 76163 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 364156 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 746040 4678203 ~ 4738405 (+)
LOC103030327 maf,LOC108428434,LOC107728098,LOC107381304,LOC108274756 coding downstream 984065 4916228 ~ 4920871 (+)
G155985 NA non-coding upstream 22136 3906994 ~ 3907195 (+)
G155978 NA non-coding upstream 80459 3848455 ~ 3848872 (+)
G155976 NA non-coding upstream 81714 3846849 ~ 3847617 (+)
G155967 NA non-coding upstream 160004 3768573 ~ 3769327 (+)
G155956 NA non-coding upstream 252474 3676632 ~ 3676857 (+)
G156009 NA non-coding downstream 28731 3960894 ~ 4005992 (+)
G156050 NA non-coding downstream 256343 4188506 ~ 4188789 (+)
G156060 NA non-coding downstream 313088 4245251 ~ 4245521 (+)
G156062 NA non-coding downstream 315659 4247822 ~ 4248039 (+)
G156066 NA non-coding downstream 337342 4269505 ~ 4269708 (+)
LOC111194753 NA other upstream 314840 3611018 ~ 3614491 (+)
G155776 NA other upstream 1174219 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 2651069 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 2705981 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 2822539 1103450 ~ 1106792 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 643505 4575668 ~ 4637290 (+)
G156188 NA other downstream 1224991 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 3161344 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 3440213 7372376 ~ 7431568 (+)
G156840 cd9a,LOC108438826,LOC107686554,LOC107733276,LOC107559685 other downstream 3668404 7600567 ~ 7606668 (+)

Expression


Co-expression Network