G188622


Basic Information

Item Value
gene id G188622
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10301168 ~ 10301380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255725
atccctcacacggactcttcgctctgatgccgtccggcagaagatacaggagcatccgagcctccactaccagactctgcaacagcttcatccaccaggcagtcagacttctcaacgcacagagacagaactgaaccccacaccacccaccactcacacaaaactgaactgaacacccccacccccccctttactcacacaaagactgaactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255725 True 213 lncRNA 0.54 1 10301168 10301380

Neighbor

gene id symbol gene type direction distance location
LOC111195375 NA coding upstream 80038 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 86220 10214359 ~ 10214948 (+)
LOC111195373 NA coding upstream 120566 10177130 ~ 10180602 (+)
LOC103039471 NA coding upstream 168459 10120033 ~ 10132709 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding upstream 260027 10023992 ~ 10041141 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding downstream 174559 10475939 ~ 10963809 (+)
LOC103041410 asic1b,LOC107569540 coding downstream 436674 10738054 ~ 10739675 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding downstream 695959 10997339 ~ 11070355 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 955778 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 972057 11273437 ~ 11303246 (+)
G188527 NA non-coding upstream 72037 10228497 ~ 10229131 (+)
G188478 NA non-coding upstream 143712 10091209 ~ 10157456 (+)
G188366 NA non-coding upstream 234745 10065738 ~ 10066423 (+)
G188358 NA non-coding upstream 329875 9964529 ~ 9971293 (+)
G188356 NA non-coding upstream 344579 9953600 ~ 9956589 (+)
G188623 NA non-coding downstream 1065 10302445 ~ 10302703 (+)
G188632 NA non-coding downstream 6006 10307386 ~ 10311022 (+)
G188639 NA non-coding downstream 22043 10323423 ~ 10323628 (+)
G188641 NA non-coding downstream 22341 10323721 ~ 10324107 (+)
G188643 NA non-coding downstream 23307 10324687 ~ 10325205 (+)
LOC111195371 NA other upstream 194638 10101755 ~ 10106530 (+)
G188325 NA other upstream 444173 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 481213 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 2029456 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 2187926 8112003 ~ 8113242 (+)
G188624 NA other downstream 1980 10303360 ~ 10303665 (+)
G188771 NA other downstream 546691 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 788348 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 1149999 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 1389492 11690872 ~ 12000663 (+)

Expression


Co-expression Network