LOC103041410 (asic1b,LOC107569540)


Basic Information

Item Value
gene id LOC103041410
gene name asic1b,LOC107569540
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10738054 ~ 10739675 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682369.1
CATACTCGTCCCAACCTTGCAGATGATCCTTAAGTGCTCTGAAGTGGAAAGAAGGACATATTTAAGGCTGCAGACCTGAAACATtctgtagatttttttgtttacctttTGCTTAAGTCTGGCAGGCAGCAGATGAGGTATGGTGTCTTTTGCTCTTATGGTGCTGCATTGGTGGTAGAATGACCTTCTGAGTTCTGGGTCATTGGTTCAACAAAGCGTCTGCATCTGGTTTTCCAGAAGATTTTGGAAGAATCTTTGGACCTTGTCAATCTGCTTTCAAGCAGACTTCTAAGCTAAACAAAGATTCCCAGAATTTGTTTGGACATTCCCTTTCTAACCTCTCAGTCATGGTGCGAATCACTTGCACAATCTCCTTCACAACAGATGATGACCCTGCCGGAGGGTCTTACCGGGACAGCTTTGATGATCACTACAAGCGAGTGGTGCGGTCTGGAGAGAGTGAACCGGGCTCCTACAAGGAAGAATGTGACGATCCAGACGTTTATGAAGAGCCAGTAGAAGAAGAGCAGCCCGATATTTCACTTGCGACATTCTTTGGCGGTTGTTCCCTTCATGGTGCCAACCACATATTTGTGGAGGAGAAGAAGTTTGGGATTCGGCAGGGTCTCTGGGCTGTGTGCTTCTTGATGGCGCTGTCCTTGTTCCTGCTTCAGGTGGGGGACCGGATTGTCTACTACCTTCAGTATGACCATATTACCATGCTGGATGAGCGCAATGCAGACAACATGACCTTCCCAGCCATCACCATCTGCAACTACAACACCTTCCGCCGCTCCCAGCTCAGCTACAGCGACCTGCTCTTCATGGGACCTCTCCTGGGTTATGAGGACAACATGGCTCCTGGCATCCCTCTTGCCCCTGAGCCCGATCGTCAGGGTGCCCGGTTCAGCTTGGCCGAGTTCTTCAACCGAACCCGACACCGGATGGAGGACATGCTGTTGGATTGCGCCTTCTCTGGGAAGGAATGTGGCCCTGAGCATtggagagaggtagaggaaTTTGTTTGAAATGTATCCATGAGCAAATTGCTGAAAATCATGTTTACAGCAATTTGATTAAACAAATGAATTTGATTGGAGAAGATTGGAAAGGAGTAGAAGAATGTCTTCAATGTATGTCAATGGAAAATTGCTGTGAACCCCTTCTAGTGTTGggagaaaacagcattttgattattcatattaattaagtaatttgaaGTAATTTTATCAATGGCATTGTACTAGCTATTTTACTGACTAGAAATGCAGAGTAGAAACATCAATAAAACTAAACAACTATGCAAAATGTATAGCCTCTAgcctttattattaagtaaaaatcTCATTACTTTCCAACTGTTGACGAGCCCTGAACCGTGGAGATTAGCTCAATGAAGGTATTAAAATGACCTAAGCAATGACCTAAATACCGCAGATTATTTTGACATAGGACATGATCAAAGGATCTAATGGTGTATGCCATTTTACTGCAGgtacaagaaaaagtatgtggaccctttgggattacttggatttctgaaTAAAGTGGTCATTACATGTGCTCTGAAGTCACaacaatacacaaacacagtctgtttaaactaataccacacaaaaaat

Function

symbol description
asic1b Enables ligand-gated sodium channel activity. Predicted to be involved in cellular response to pH; protein homotrimerization; and sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill and integument. Orthologous to human ASIC1 (acid sensing ion channel subunit 1).

NR:

description
acid-sensing ion channel 1B

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682369.1 True 1622 mRNA 0.44 1 10738054 10739675

Neighbor

gene id symbol gene type direction distance location
LOC111195375 NA coding upstream 516924 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 523106 10214359 ~ 10214948 (+)
LOC111195373 NA coding upstream 557452 10177130 ~ 10180602 (+)
LOC103039471 NA coding upstream 605345 10120033 ~ 10132709 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding upstream 696913 10023992 ~ 10041141 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding downstream 257664 10997339 ~ 11070355 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 517483 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 533762 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 819707 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 1471070 12210745 ~ 12226480 (+)
G188710 NA non-coding upstream 94074 10600268 ~ 10643980 (+)
G188716 NA non-coding upstream 125962 10609009 ~ 10612092 (+)
G188672 NA non-coding upstream 247810 10428468 ~ 10490244 (+)
G188650 NA non-coding upstream 397159 10340655 ~ 10340895 (+)
G188643 NA non-coding upstream 412849 10324687 ~ 10325205 (+)
G188763 NA non-coding downstream 53304 10792979 ~ 10794567 (+)
G188769 NA non-coding downstream 93801 10833476 ~ 10887584 (+)
G188906 NA non-coding downstream 269740 11009415 ~ 11010628 (+)
G188907 NA non-coding downstream 286709 11026384 ~ 11026808 (+)
G188909 NA non-coding downstream 290854 11030529 ~ 11031324 (+)
G188624 NA other upstream 434389 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 631524 10101755 ~ 10106530 (+)
G188325 NA other upstream 881059 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 918099 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 2466342 8256796 ~ 8271712 (+)
G188771 NA other downstream 108396 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 350053 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 711704 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 951197 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1491112 12230787 ~ 12236092 (+)

Expression


Co-expression Network