G188710


Basic Information

Item Value
gene id G188710
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10600268 ~ 10643980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255829
TGTCGTCCAGGTTGAACTAGCTCCAGAGCCAGCCAGGCAATGGGAGCGaaatcctgggatggatttttactttttgaacctaaattacccacctctacacctaaactcataaaattaaaagctcacACACGCTCTTCAAACAAACTTACAACCCTGAATCCATAGCCTAGACCTAGCAAGCAAACCTTGGCATGTCTTGGTCTGTACCAAGCCATGACAAACATTACAAATTCACCATTAGTGCATCACTAGTTTACTACAATATCTTATCAACATATAACTGTAGGAAACTTTCAGTTTACCTCAATATCCTTTTACAAATTAGATGGTGGATTTCTGAAATCTCGTGCTGCTGAGCTGCATCGCATCCGAAAAGAGTTGTTTTTGCATCCGACCATTCCGAAGCCCCTCGCTGCAGCTGGAGACGCATAACTGGGGTCTTCCTACCAACTTTCTCACTGGCGCACTTCTGGAGTTTGACGTGACGTGCAGGTCATGCACAAAATACAAACCAATAGAGGGTCTGAATGGTATAGGTTTATACTTGTTATCCAAGCACAAGCTTTCCGGATGGCGTGATTtatctgtttgttgttttttatgttgccGGAATGAAATTTATTTTATCCGTGCGtcgtatttattttttttttagttcaggcAGTTTTTTTACCAGCAtttgttacgccctcgctatgttttcctgtgttttccccgtttcctattgtgtttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255829 True 734 lncRNA 0.42 2 10600268 10643980

Neighbor

gene id symbol gene type direction distance location
LOC111195375 NA coding upstream 379138 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 385320 10214359 ~ 10214948 (+)
LOC111195373 NA coding upstream 419666 10177130 ~ 10180602 (+)
LOC103039471 NA coding upstream 467559 10120033 ~ 10132709 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding upstream 559127 10023992 ~ 10041141 (+)
LOC103041410 asic1b,LOC107569540 coding downstream 94074 10738054 ~ 10739675 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding downstream 353359 10997339 ~ 11070355 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 613178 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 629457 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 915402 11559382 ~ 11562194 (+)
G188672 NA non-coding upstream 110024 10428468 ~ 10490244 (+)
G188650 NA non-coding upstream 259373 10340655 ~ 10340895 (+)
G188643 NA non-coding upstream 275063 10324687 ~ 10325205 (+)
G188641 NA non-coding upstream 276161 10323721 ~ 10324107 (+)
G188639 NA non-coding upstream 276640 10323423 ~ 10323628 (+)
G188763 NA non-coding downstream 148999 10792979 ~ 10794567 (+)
G188769 NA non-coding downstream 189496 10833476 ~ 10887584 (+)
G188906 NA non-coding downstream 365435 11009415 ~ 11010628 (+)
G188907 NA non-coding downstream 382404 11026384 ~ 11026808 (+)
G188909 NA non-coding downstream 386549 11030529 ~ 11031324 (+)
G188624 NA other upstream 296603 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 493738 10101755 ~ 10106530 (+)
G188325 NA other upstream 743273 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 780313 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 2328556 8256796 ~ 8271712 (+)
G188771 NA other downstream 204091 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 445748 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 807399 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 1046892 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1586807 12230787 ~ 12236092 (+)

Expression


Co-expression Network