G188763


Basic Information

Item Value
gene id G188763
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10792979 ~ 10794567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255886
aaaacatcctaacctcaccaaaacatccagctaacctcaccaaaacatccagccaacctcaccaatgcatccagctaacctcaccaatgcatccagctaacctcaccaatacatccagctaacctcaccaaaacattcaagcaacctcaccaaaacattcaGCCAACCTCACAatacatccagccaacctctcCAAAACATTCAAGCaaactcaccaaaacatccagccaacctcaccaatCAACCAgtcaacctcaccaaaacattcaAGCAACcttaccaaaacatccagccaacctcaccaaaacatccaactaacctcaccaaaacaaccagccaacctcaccaaaacattcaAGCAACCTCACtcaaacatccagccaacctcaccaatacatccagctaacctcaccaaaacatccagctaacctcaccaaaacatccagccaacctcaccaaaacattcaAGCAACCTTACCCAagcatccagccaacctcatcaatacatccagctaacctcaccaaTACATCTagctaacctcaccaaaacatccagctaacatcaccaatacatccagctaacctcaccaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255886 True 594 lncRNA 0.45 3 10792979 10794567

Neighbor

gene id symbol gene type direction distance location
LOC103041410 asic1b,LOC107569540 coding upstream 53304 10738054 ~ 10739675 (+)
LOC111195375 NA coding upstream 571849 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 578031 10214359 ~ 10214948 (+)
LOC111195373 NA coding upstream 612377 10177130 ~ 10180602 (+)
LOC103039471 NA coding upstream 660270 10120033 ~ 10132709 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding downstream 202772 10997339 ~ 11070355 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 462591 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 478870 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 764815 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 1416178 12210745 ~ 12226480 (+)
G188710 NA non-coding upstream 148999 10600268 ~ 10643980 (+)
G188716 NA non-coding upstream 180887 10609009 ~ 10612092 (+)
G188672 NA non-coding upstream 302735 10428468 ~ 10490244 (+)
G188650 NA non-coding upstream 452084 10340655 ~ 10340895 (+)
G188643 NA non-coding upstream 467774 10324687 ~ 10325205 (+)
G188769 NA non-coding downstream 38909 10833476 ~ 10887584 (+)
G188906 NA non-coding downstream 214848 11009415 ~ 11010628 (+)
G188907 NA non-coding downstream 231817 11026384 ~ 11026808 (+)
G188909 NA non-coding downstream 235962 11030529 ~ 11031324 (+)
G188912 NA non-coding downstream 259385 11053952 ~ 11054952 (+)
G188624 NA other upstream 489314 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 686449 10101755 ~ 10106530 (+)
G188325 NA other upstream 935984 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 973024 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 2521267 8256796 ~ 8271712 (+)
G188771 NA other downstream 53504 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 295161 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 656812 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 896305 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1436220 12230787 ~ 12236092 (+)

Expression


Co-expression Network