RNA id: TU255886


Basic Information

Item Value
RNA id TU255886
length 594
lncRNA type intronic
GC content 0.45
exon number 3
gene id G188763
representative True

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10792979 ~ 10794567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaacatcctaacctcaccaaaacatccagctaacctcaccaaaacatccagccaacctcaccaatgcatccagctaacctcaccaatgcatccagctaacctcaccaatacatccagctaacctcaccaaaacattcaagcaacctcaccaaaacattcaGCCAACCTCACAatacatccagccaacctctcCAAAACATTCAAGCaaactcaccaaaacatccagccaacctcaccaatCAACCAgtcaacctcaccaaaacattcaAGCAACcttaccaaaacatccagccaacctcaccaaaacatccaactaacctcaccaaaacaaccagccaacctcaccaaaacattcaAGCAACCTCACtcaaacatccagccaacctcaccaatacatccagctaacctcaccaaaacatccagctaacctcaccaaaacatccagccaacctcaccaaaacattcaAGCAACCTTACCCAagcatccagccaacctcatcaatacatccagctaacctcaccaaTACATCTagctaacctcaccaaaacatccagctaacatcaccaatacatccagctaacctcaccaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU255829 lncRNA upstream 148999 10600268 ~ 10643980 (+) True G188710
TU255837 lncRNA upstream 180887 10609009 ~ 10612092 (+) True G188716
TU255786 lncRNA upstream 302735 10428468 ~ 10490244 (+) True G188672
TU255763 lncRNA upstream 452084 10340655 ~ 10340895 (+) True G188650
TU255756 lncRNA upstream 467774 10324687 ~ 10325205 (+) True G188643
TU255901 lncRNA downstream 38909 10833476 ~ 10887584 (+) True G188769
TU255904 lncRNA downstream 54014 10848581 ~ 10849214 (+) False G188771
TU256047 lncRNA downstream 214848 11009415 ~ 11010628 (+) True G188906
TU256048 lncRNA downstream 231817 11026384 ~ 11026808 (+) True G188907
TU256050 lncRNA downstream 235962 11030529 ~ 11031324 (+) True G188909
XM_022682369.1 mRNA upstream 53304 10738054 ~ 10739675 (+) True LOC103041410
XM_007240551.3 mRNA upstream 660270 10120033 ~ 10132709 (+) False LOC103039471
XM_007240548.3 mRNA upstream 660270 10128195 ~ 10132709 (+) True LOC103039471
XM_022682365.1 mRNA upstream 661130 10128195 ~ 10131849 (+) False LOC103039471
XM_022682361.1 mRNA upstream 686449 10101755 ~ 10106530 (+) True LOC111195371
XM_022682370.1 mRNA downstream 202772 10997339 ~ 11070355 (+) True slc25a26
XM_022682372.1 mRNA downstream 462591 11257158 ~ 11266360 (+) True kbtbd8
XM_022682373.1 mRNA downstream 478870 11273437 ~ 11303246 (+) True LOC103022498
XM_022682857.1 mRNA downstream 764815 11559382 ~ 11562194 (+) True LOC111195454
XM_022682375.1 mRNA downstream 896305 11690872 ~ 12000663 (+) True fam19a1
TU255727 other upstream 489314 10303360 ~ 10303665 (+) True G188624
XR_002651604.1 other upstream 571849 10220542 ~ 10221130 (+) True LOC111195375
XR_002651603.1 other upstream 578031 10214359 ~ 10214948 (+) True LOC111195374
XR_002651602.1 other upstream 612377 10177130 ~ 10180602 (+) True LOC111195373
TU255566 other upstream 686679 10104616 ~ 10106300 (+) False LOC111195371
TU255903 other downstream 53504 10848071 ~ 10852736 (+) True G188771
TU256068 other downstream 295161 11089728 ~ 11090047 (+) True G188923
TU256132 other downstream 656812 11451379 ~ 11464480 (+) True G188968
TU256169 other downstream 896319 11690886 ~ 12000653 (+) False fam19a1
XR_002651606.1 other downstream 1012141 11806708 ~ 11807095 (+) True LOC111195378

Expression Profile