LOC111195378


Basic Information

Item Value
gene id LOC111195378
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 11806708 ~ 11807095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651606.1
GGTTATAGTTCAGATCAGCCATTTTGTACCCTGTTTTGTAAGAGCTCACATGTTCTCGGGAGCTAACGAGAATCCTTGCAATCCTCACGTGCCGATCCATGAAGAAGCTTTGCCttttcacACAATAGAGAGCATTTGGAGCTCATGTTGCTCAGGACATTACAAGTAAAGAACTCTACACTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651606.1 True 185 ncRNA 0.43 2 11806708 11807095

Neighbor

gene id symbol gene type direction distance location
LOC111195454 NA coding upstream 244514 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 503462 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 540348 11257158 ~ 11266360 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 736353 10997339 ~ 11070355 (+)
LOC103041410 asic1b,LOC107569540 coding upstream 1067033 10738054 ~ 10739675 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 403650 12210745 ~ 12226480 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 438374 12245469 ~ 12250437 (+)
LOC103039330 LOC108434991 coding downstream 681667 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 740555 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 807825 12614920 ~ 12622920 (+)
G188999 NA non-coding upstream 222829 11583465 ~ 11583879 (+)
G188964 NA non-coding upstream 382373 11369410 ~ 11424335 (+)
G188963 NA non-coding upstream 435059 11346874 ~ 11371649 (+)
G188956 NA non-coding upstream 483676 11296605 ~ 11323032 (+)
G188952 NA non-coding upstream 490225 11269267 ~ 11316483 (+)
G189025 NA non-coding downstream 237048 12044143 ~ 12044418 (+)
G189071 NA non-coding downstream 394324 12201419 ~ 12205983 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding downstream 430735 12237830 ~ 12240238 (+)
G189066 NA non-coding downstream 449388 12256483 ~ 12259037 (+)
G189104 NA non-coding downstream 520519 12327614 ~ 12328459 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 342228 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 716661 11089728 ~ 11090047 (+)
G188771 NA other upstream 953972 10848071 ~ 10852736 (+)
G188624 NA other upstream 1503043 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 1700178 10101755 ~ 10106530 (+)
G189073 hmces other downstream 423692 12230787 ~ 12236092 (+)
G189141 NA other downstream 632508 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 721944 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 1010092 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 1188577 12995672 ~ 12996904 (+)

Expression


Co-expression Network