LOC103043048 (rab7a,rab7,LOC106583206,LOC102230535,LOC108254780)


Basic Information

Item Value
gene id LOC103043048
gene name rab7a,rab7,LOC106583206,LOC102230535,LOC108254780
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12210745 ~ 12226480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256424.3
AGAGAACAGGTGGGACGGGGGGCTCGGTTAGAGCGGGGTGATGTGAGCGGTGACGCGCTGAGATCACTCTCAGGCTTGTTGTTTTGGAGGAAGTGAGCGGCTCGCGGATCCCGagcagagaagaaagaaagagaaaggagaaaaaaacccGGGCGGTTTTAACGGTGTAAAACGGCGTTGAAGGACGGCGTTAGTGTCGCTGTTTAAGAGTAGCCAGACAGAGCTGGAGCAGAGCGCGGGCCGGCGGCTGTCAGCGCAGCAGAAACACGGACAGACAGAAGAAACAATAGTGTGACTGACGACTGGCTGTGGGCGaggaggagctgctgctgctagccGTTAGCTTCCAGACCAGCTAACGAGACCCGAGCCGCTGTTCTGAGAGTCTGAGGAGCTGTGACACAATGACATCGAGGAAGAAAGTTCTACTGAAGGTCATCATCCTTGGAGACTCAGGAGTGGGGAAGACTTCGCTGATGAACCAGTATGTGAACAAAAAGTTTAGCAATCAGTACAAAGCCACAATAGGAGCCGATTTCCTGACGAAAGAGGTGATGGTGGACGACCGACTCGTCACAATGCAGATTTGGGACACAGCAGGTCAAGAGCGTTTCCAGTCTTTGGGCGTGGCATTCTACCGTGGTGCAGATTGTTGCGTGCTAGTCTTTGACGTCACAGCACCCAACACATTTAAGACACTGGACAGCTGGAGGGACGAGTTCTTGATCCAGGCCAGCCCGCGTGACCCTGAGAACTTCCCCTTCGTTGTGCTCGGCAACAAAATCGACCTAGAGAATCGGCAGGTAACCACCAAGAGGGCACAAGCCTGGTGCCAGAGCAAGAACAACATCCCGTACTTTGAGACCAGCGCCAAGGAGGCCATCAACGTAGAACAAGCTTTCCAGACTATTGCACGCAATGCACTGAAACAGGAAACTGAAGTGGAGTTGTACAACGAGTTTCCAGAACCCATCAAGCTGGACAGAAATGATAGAGCCAAGCCATCAGCAGAGACCTGCAGCTGCTGAAGACCTCCAGGGGCGCTGCTGACCACCCTCTatcctctttatctctctctctctctctctctctctttctctcttttttctctttctctggccTTGTTTCATCTCTACCACCCTGATTTTCTTCCCTACCCCTCTCAGTCCCTCTTTATGTAAATTTCTGGTCTTTCtatcgctctttctctctctctctctctctctctctctctctctctttctttctctctcttctctctctctctctttctctctctctgttccccAATGTAATCACTGGCCTTCATAGAGCAAGCAGGCTTCCTCTCCTAGAATATAccctatacaaaaaaaattgcactcACAACCATACACATGTGAACAtgcaccaaactgaactgcacacacttactctctctttctctctcacacactcacacacatcagTGCTCAAAGAGGCTCTATACCTGAAGCCCAAAGAAttctaataatacaaaaaaaaaactttggtaCATGTGTTTCCAGGCCCTCGATATTAGCTCTTTTAACCTTTAATCTTCTCACAGAGTCCTAACACCTTTCACAGGATCCTCCAGTATCCTTTCAGCTCACACaaaccccccacacacacacactgacacacacttcTCTCGAATATgcgcgcacacgcacacacacacatacactgttaATTCTGAACCTCTCACAGCACTTGAAATGGTTTCTGAGACTTTTTATATGAACCCACCacctccttctcttcctcctcttccagCACCATGTAACTGGAATCTGTACGATCAATGGGGCTGTGTAATATATCTGTGTATTAAAAGCTCTGTGTTGGTATCAAAA
>XM_015607644.2
CACGTTTGCTAACAAAGAATATGCTGTGACACAATGACATCGAGGAAGAAAGTTCTACTGAAGGTCATCATCCTTGGAGACTCAGGAGTGGGGAAGACTTCGCTGATGAACCAGTATGTGAACAAAAAGTTTAGCAATCAGTACAAAGCCACAATAGGAGCCGATTTCCTGACGAAAGAGGTGATGGTGGACGACCGACTCGTCACAATGCAGATTTGGGACACAGCAGGTCAAGAGCGTTTCCAGTCTTTGGGCGTGGCATTCTACCGTGGTGCAGATTGTTGCGTGCTAGTCTTTGACGTCACAGCACCCAACACATTTAAGACACTGGACAGCTGGAGGGACGAGTTCTTGATCCAGGCCAGCCCGCGTGACCCTGAGAACTTCCCCTTCGTTGTGCTCGGCAACAAAATCGACCTAGAGAATCGGCAGGTAACCACCAAGAGGGCACAAGCCTGGTGCCAGAGCAAGAACAACATCCCGTACTTTGAGACCAGCGCCAAGGAGGCCATCAACGTAGAACAAGCTTTCCAGACTATTGCACGCAATGCACTGAAACAGGAAACTGAAGTGGAGTTGTACAACGAGTTTCCAGAACCCATCAAGCTGGACAGAAATGATAGAGCCAAGCCATCAGCAGAGACCTGCAGCTGCTGAAGACCTCCAGGGGCGCTGCTGACCACCCTCTatcctctttatctctctctctctctctctctctctttctctcttttttctctttctctggccTTGTTTCATCTCTACCACCCTGATTTTCTTCCCTACCCCTCTCAGTCCCTCTTTATGTAAATTTCTGGTCTTTCtatcgctctttctctctctctctctctctctctctctctctctctttctttctctctcttctctctctctctctttctctctctctgttccccAATGTAATCACTGGCCTTCATAGAGCAAGCAGGCTTCCTCTCCTAGAATATAccctatacaaaaaaaattgcactcACAACCATACACATGTGAACAtgcaccaaactgaactgcacacacttactctctctttctctctcacacactcacacacatcagTGCTCAAAGAGGCTCTATACCTGAAGCCCAAAGAAttctaataatacaaaaaaaaaactttggtaCATGTGTTTCCAGGCCCTCGATATTAGCTCTTTTAACCTTTAATCTTCTCACAGAGTCCTAACACCTTTCACAGGATCCTCCAGTATCCTTTCAGCTCACACaaaccccccacacacacacactgacacacacttcTCTCGAATATgcgcgcacacgcacacacacacatacactgttaATTCTGAACCTCTCACAGCACTTGAAATGGTTTCTGAGACTTTTTATATGAACCCACCacctccttctcttcctcctcttccagCACCATGTAACTGGAATCTGTACGATCAATGGGGCTGTGTAATATATCTGTGTATTAAAAGCTCTGTGTTGGTATCAAAA

Function

symbol description
rab7a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within endosomal transport. Located in late endosome. Is expressed in neural crest. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).
rab7 Predicted to enable several functions, including guanyl ribonucleotide binding activity; retromer complex binding activity; and small GTPase binding activity. Involved in lipophagy. Acts upstream of or within with a positive effect on establishment of vesicle localization. Located in several cellular components, including late endosome membrane; lipid droplet; and phagophore assembly site membrane. Is extrinsic component of lysosome membrane. Is active in lysosome. Is expressed in limb mesenchyme and lung mesenchyme. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2B. Orthologous to human RAB7A (RAB7A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-7a isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256424.3 True 1856 mRNA 0.49 6 12210745 12226480
XM_015607644.2 False 1485 mRNA 0.46 6 12219996 12226480

Neighbor

gene id symbol gene type direction distance location
LOC111195454 NA coding upstream 648551 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 907499 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 944385 11257158 ~ 11266360 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 1140390 10997339 ~ 11070355 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding upstream 1246936 10475939 ~ 10963809 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 18989 12245469 ~ 12250437 (+)
LOC103039330 LOC108434991 coding downstream 262282 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 321170 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 388440 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 397690 12624170 ~ 12655103 (+)
G189071 NA non-coding upstream 4762 12201419 ~ 12205983 (+)
G189025 NA non-coding upstream 166327 12044143 ~ 12044418 (+)
LOC111195378 NA non-coding upstream 403650 11806708 ~ 11807095 (+)
G188999 NA non-coding upstream 626866 11583465 ~ 11583879 (+)
G188964 NA non-coding upstream 786410 11369410 ~ 11424335 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding downstream 11350 12237830 ~ 12240238 (+)
G189066 NA non-coding downstream 30003 12256483 ~ 12259037 (+)
G189104 NA non-coding downstream 101134 12327614 ~ 12328459 (+)
G189101 NA non-coding downstream 109055 12335535 ~ 12345772 (+)
G189115 NA non-coding downstream 170070 12396550 ~ 12397106 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 210082 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 746265 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1120698 11089728 ~ 11090047 (+)
G188771 NA other upstream 1358009 10848071 ~ 10852736 (+)
G188624 NA other upstream 1907080 10303360 ~ 10303665 (+)
G189073 hmces other downstream 4307 12230787 ~ 12236092 (+)
G189141 NA other downstream 213123 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 302559 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 590707 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 769192 12995672 ~ 12996904 (+)

Expression


Co-expression Network