psma5 (psma5)


Basic Information

Item Value
gene id psma5
gene name psma5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12614920 ~ 12622920 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254542.3
ACCAAAAAACAAGAGTCCCgggtctgtttttttcttcgGAGCAGTTTCACGAGGCCGCTTCCTTCCCTGTTGAAACAAGCAGACTCACTGTTCAGCTGCAGACATTTCTTATTCAGGATGTTCCTGACGAGATCAGAATACGACAGAGGCGTGAACACTTTCTCTCCCGAGGGAAGACTTTTCCAAGTGGAGTATGCGATTGAAGCTATTAAgCTAGGGTCTACGGCCATTGGCATCCAGACGTCAGAAGGAGTATGTCTTGCTGTGGAGAAGAGAATCACCTCGCCGCTGATGGAGCCCAGCAGTATCGAGAAGATCGTAGAGATTGACACTCACATCGGTTGTGCTATGAGTGGATTGATAGCTGATGCCAAAACGCTTATCGACAAAGCACGGGTGGAAACACAGAACCACTGGTTCACCTACAACGAGACGATGACGGTAGAAAGTGTGACTCAGGCGGTGTCTAACCTGGCTCTTCAGTTTGGAGAGGAGGACGCAGACCCTGGTGCCATGAGCCGTCCCTTTGGTGTCGCCTTGCTTTTTGGAGGTGTGGATGAAAAAGGACCCCAACTGTACCATATGGACCCCTCAGGCACGTTCGTGCAGTGTGACGCCCGAGCTATTGGATCTGCGTCTGAGGGCGCTCAGAGCTCTCTGCAGGAAGTCTATCACAAGTCCATGACATTAAAAGAAGCCATCAAGTCTTCCCTCACCATCCTAAAACAGGTTATGGAGGAGAAGCTGAACGCTACTAACATTGAGCTTGCCACAATAGAGCCAGGCAAGACCTTCCACATGTACACAAAAGAGGAACTTGAGGACGTCATTAAGGACATCTAGAGCTCTTATGTGCAGGTCCGACTGATGTTCCGTTGGAGAATCCTCATGCAGCTCTGTGCAAATTGTCACCGAGTAACAGCCAACCTACTAGCAGCCTGGCTGCGTTTTGAAGGTTTGCCTGTTCAGACCACAGTACACAATTTATactgttttcttttccttttctttcttctgtcaATCCAGAATTGTTTCTACAGTTCTGTACAGGCAACAGAACATCAGTACTTGTAGGGgagtggaaaaaataataaatggggAGGGTGGGAGGtaggttttttttgttacaaatcaATACCTTAATAAACTGTTGTATTCTGAAAGAA

Function

symbol description
psma5 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA5 (proteasome 20S subunit alpha 5).

NR:

description
Proteasome subunit alpha type-5

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02729 PSMA5; 20S proteasome subunit alpha 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254542.3 True 1166 mRNA 0.47 10 12614920 12622920

Neighbor

gene id symbol gene type direction distance location
zbtb40 LOC107743242 coding upstream 49897 12547650 ~ 12565023 (+)
LOC103039330 LOC108434991 coding upstream 110628 12488762 ~ 12504292 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 364483 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 388440 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 1052726 11559382 ~ 11562194 (+)
sort1 sort1 coding downstream 1250 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 66895 12689815 ~ 12711044 (+)
atrip NA coding downstream 263537 12886457 ~ 12902687 (+)
rab43 rab43,LOC107675972,LOC107758163,LOC107700634 coding downstream 318089 12941009 ~ 12948543 (+)
LOC103027930 raf1,LOC106571905 coding downstream 378986 13001906 ~ 13032393 (+)
G189186 NA non-coding upstream 16929 12593483 ~ 12597991 (+)
G189185 NA non-coding upstream 48784 12565573 ~ 12566136 (+)
G189182 NA non-coding upstream 88300 12526268 ~ 12526620 (+)
G189180 ldlrad2 non-coding upstream 91006 12523007 ~ 12523914 (+)
G189179 NA non-coding upstream 92710 12521485 ~ 12522210 (+)
G189228 NA non-coding downstream 146224 12769144 ~ 12769538 (+)
G189216 NA non-coding downstream 146661 12769581 ~ 12770649 (+)
G189239 LOC102215143,LOC103358119 non-coding downstream 237603 12860523 ~ 12861588 (+)
G189243 NA non-coding downstream 252974 12875894 ~ 12876136 (+)
G189241 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 non-coding downstream 257945 12880865 ~ 12884695 (+)
usp48 usp48,LOC107743244,LOC107659552 other upstream 68468 12529039 ~ 12546452 (+)
G189141 NA other upstream 174187 12439603 ~ 12440733 (+)
G189073 hmces other upstream 378828 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 614257 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 1150440 11451379 ~ 11464480 (+)
LOC111195379 cenpp other downstream 194267 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 372752 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 792149 13415069 ~ 13427065 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other downstream 1350859 13973779 ~ 14044727 (+)
G189621 NA other downstream 1484382 14107302 ~ 14108108 (+)

Expression


Co-expression Network