LOC111195379 (cenpp)


Basic Information

Item Value
gene id LOC111195379
gene name cenpp
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12817187 ~ 12820082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256481
cagtaattatatcccCATTACTAACCCCAACTATTAAACgtaatttagaataaaaatgacCACTACTTATAATACAAGGTTATAAACCATAACTGTGAAGTGGAAAAACCACAGTCAGTGAAAACTCTAAGACTGGCTGTTATAACGTCATGCCTGTTTTGTTGCAGAAGTTTTGAaccctttattggaaacactgcCAACTTCCACTGGTCTGTGGGTGTGTGGGCTTTTACTGTCTAAAAATGAAGCCCCTGTAATCAAATGTCGATGAAGAAAAAGTTTTAGGAGACTTTATTGGAATGGAAACTTATGAAAAGTTCAATAATCAAAGTCTTTAACTGCCTTTAATTCATGGTTTTCTTTTTTGGCAGGAGAAATATCCAGATGTGGTTCACCTTCCCGAGGGGTGCAGGTCAGAGGTCATGATGATCCACAGTCCTAAGCTTCCTGGGTGCACAATGAGTATTTTCTGGAACATCAGTGTGAATAAAGGAGGGACTGTCCAACCAAAAATTGAGCTTCTGATGAAAGTGCCTGAACAAGctcAAAAGTTGGACACCAACAATGTGATGGCGACTGCACCTGAAGCCTTTCGAAGTCTCCTGCTGATTTTTGGAGTGGAAACCTCGATCGAAAGTTTAATTAAAGCTGTATGTTTCTAAATAGCAACCATGCAACCAGACTGGTCTGAACAGAACATCCAAAAACACGGATTTAGCTGATAAAttcattataattttattcagtATAAACACCACCTGTATAAGCCACCCtttaagaaatgtattaatGCCTTCTGTACACATTCCATCATCACATGTATATGTAcgcacatactgtatgtaaatatacatCATTAGACAATagctagaaaaataaataatttaaatacaaaatgtga
>XM_022682396.1
GAGAAATATCCAGATGTGGTTCACCTTCCCGAGGGGTGCAGGTCAGAGGTCATGATGATCCACAGTCCTAAGCTTCCTGGGTGCACAATGAGTATTTTCTGGAACATCAGTGTGAATAAAGGAGGGACTGTCCAACCAAAAATTGAGCTTCTGATGAAAGTGCCTGAACAAGctcAAAAGTTGGACACCAACAATGTGATGGCGACTGCACCTGAAGCCTTTCGAAGTCTCCTGCTGATTTTTGGAGTGGAAACCTCGATCGAAAGTTTAATTAAAGCTGTATGTTTCTAAATAGCAACCATGCAACCAGACTGGTCTGAACAGAACATCCAAAAACACGGATTTAGCTGATAAAttcattataattttattcagtATAAACACCACCTGTATAAGCCACCCtttaagaaatgtattaatGCCTTCTGTACACATTCCATCATCACATGTATATGTAcgcacatactgtatgtaaatatacatCATTAGACAATagctagaaaaataaataatttaaatacaaaatgtgaCAGCAAAATCCACTTTGTATTTCTGAAATAGTTTATCTTTTTAGTCCTTCCTTCATCTCATCACAGTGATTGTGATTTCTTAGaggattaataataataataatatttcatttCTATCTAAAGGTCAGGTGTTAAGCATCCTTTACACATCTCTGTAGTGAGAGGGTCACCAAGCCCCGCCCCTAGAAAGAACACAGATACTCGTGCCTCACTCAGTGCACGTCGGTTAAATGACGTAAATACTAATGATAGGTGGGACTTAGCAGCTACCAATCAGCAGCATGTCAGCACAAAGCTAATCGGCGTCTACACATTATTTCAGTCcctgttagcaacattagcattctTCATTAAACCAGCACTCGTTATACTTAAAGTCTAAAAGGGGGGATGTTACAGTAACTGCgttttgtttaaaatggaaacgtCTGTTTTTACTgcagcgagagagacagacgaTAGAGTCCTAGACTGAGAACTTTTACTCACATGTACACATGAAATTCCCTCACTGTAATCAGATCAGCctgcatcaaaaaaaaaaaaaaaaaaaacac

Function

symbol description
cenpp Predicted to act upstream of or within CENP-A containing nucleosome assembly. Predicted to be located in chromosome, centromeric region. Predicted to be active in nucleus. Orthologous to human CENPP (centromere protein P).

NR:

description
PREDICTED: centromere protein P isoform X2

GO:

id name namespace
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11508 CENPP; centromere protein P

RNA

RNA id representative length rna type GC content exon number start site end site
TU256481 False 901 lncRNA 0.37 3 12817187 12819525
XM_022682396.1 True 1087 mRNA 0.38 3 12817558 12820082

Neighbor

gene id symbol gene type direction distance location
rrp9 rrp9 coding upstream 106143 12689815 ~ 12711044 (+)
sort1 sort1 coding upstream 162084 12624170 ~ 12655103 (+)
psma5 psma5 coding upstream 194267 12614920 ~ 12622920 (+)
zbtb40 LOC107743242 coding upstream 252164 12547650 ~ 12565023 (+)
LOC103039330 LOC108434991 coding upstream 312895 12488762 ~ 12504292 (+)
atrip NA coding downstream 66375 12886457 ~ 12902687 (+)
rab43 rab43,LOC107675972,LOC107758163,LOC107700634 coding downstream 120927 12941009 ~ 12948543 (+)
LOC103027930 raf1,LOC106571905 coding downstream 181824 13001906 ~ 13032393 (+)
LOC103028772 NA coding downstream 228401 13048483 ~ 13053697 (+)
LOC103028457 LOC103028457,LOC108431549,LOC108255015,LOC105904684 coding downstream 236680 13056762 ~ 13061595 (+)
G189216 NA non-coding upstream 46538 12769581 ~ 12770649 (+)
G189228 NA non-coding upstream 47649 12769144 ~ 12769538 (+)
G189186 NA non-coding upstream 219196 12593483 ~ 12597991 (+)
G189185 NA non-coding upstream 251051 12565573 ~ 12566136 (+)
G189182 NA non-coding upstream 290567 12526268 ~ 12526620 (+)
G189239 LOC102215143,LOC103358119 non-coding downstream 40441 12860523 ~ 12861588 (+)
G189243 NA non-coding downstream 55812 12875894 ~ 12876136 (+)
G189241 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 non-coding downstream 60783 12880865 ~ 12884695 (+)
G189246 LOC108431553 non-coding downstream 85249 12905331 ~ 12956448 (+)
G189249 NA non-coding downstream 91807 12911889 ~ 12916108 (+)
usp48 usp48,LOC107743244,LOC107659552 other upstream 270735 12529039 ~ 12546452 (+)
G189141 NA other upstream 376454 12439603 ~ 12440733 (+)
G189073 hmces other upstream 581095 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 816524 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 1352707 11451379 ~ 11464480 (+)
G189268 LOC106583855 other downstream 175590 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 594987 13415069 ~ 13427065 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other downstream 1153697 13973779 ~ 14044727 (+)
G189621 NA other downstream 1287220 14107302 ~ 14108108 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other downstream 1294122 14114204 ~ 14171621 (+)

Expression


Co-expression Network