G189185


Basic Information

Item Value
gene id G189185
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12565573 ~ 12566136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256435
ATTGGAATGATGCCtctctataaaaaaacactaatttgtgtttttacttcataaataaaaagaaatcctgCAGGATATCAGGTCAGCTTTATAACAAATATTCAGTCGTAAGACATTATTAGAGACATAAACTCTGGCAGTAAAGAAATTGATGGTATAATTCTCACACTATTCACAGCTGTGAATTGGgtaaatatttaatcactagATCACTATTGAGTGAACTTTGATCTGATCTTATAGGCTGTGTTGTGGTTCAGTAGATCATTTAAAGGCTCAGGTACATTCAGAAATAAGTAACCTGCACCGAATGACCTCAATTTATACTATGAACTTCTGTTCACTTTGTGTCTCAGTGCTTACCAGCATTCATTCATGTACCTGATAAACACACCTGTTTCTTGGAGCAAGGCTAAAGacgctgtccagtgaaaaaaacaagcatctccaaaacagcagatTTACAGGAGATAAATAAAACTTTCTACTAACTAAGTCAgtataaaaagtttatttctgtttattttgaaGAACTTATCATGAAATGTTAATTCAGTGTAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256435 True 564 lncRNA 0.33 1 12565573 12566136

Neighbor

gene id symbol gene type direction distance location
zbtb40 LOC107743242 coding upstream 550 12547650 ~ 12565023 (+)
LOC103039330 LOC108434991 coding upstream 61281 12488762 ~ 12504292 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 315136 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 339093 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 1003379 11559382 ~ 11562194 (+)
psma5 psma5 coding downstream 48784 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 58034 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 123679 12689815 ~ 12711044 (+)
atrip NA coding downstream 320321 12886457 ~ 12902687 (+)
rab43 rab43,LOC107675972,LOC107758163,LOC107700634 coding downstream 374873 12941009 ~ 12948543 (+)
G189182 NA non-coding upstream 38953 12526268 ~ 12526620 (+)
G189180 ldlrad2 non-coding upstream 41659 12523007 ~ 12523914 (+)
G189179 NA non-coding upstream 43363 12521485 ~ 12522210 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding upstream 46143 12518864 ~ 12519430 (+)
G189175 NA non-coding upstream 59661 12505356 ~ 12505912 (+)
G189186 NA non-coding downstream 27347 12593483 ~ 12597991 (+)
G189228 NA non-coding downstream 203008 12769144 ~ 12769538 (+)
G189216 NA non-coding downstream 203445 12769581 ~ 12770649 (+)
G189239 LOC102215143,LOC103358119 non-coding downstream 294387 12860523 ~ 12861588 (+)
G189243 NA non-coding downstream 309758 12875894 ~ 12876136 (+)
usp48 usp48,LOC107743244,LOC107659552 other upstream 19121 12529039 ~ 12546452 (+)
G189141 NA other upstream 124840 12439603 ~ 12440733 (+)
G189073 hmces other upstream 329481 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 564910 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 1101093 11451379 ~ 11464480 (+)
LOC111195379 cenpp other downstream 251051 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 429536 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 848933 13415069 ~ 13427065 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other downstream 1407643 13973779 ~ 14044727 (+)
G189621 NA other downstream 1541166 14107302 ~ 14108108 (+)

Expression


Co-expression Network