G189179


Basic Information

Item Value
gene id G189179
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12521485 ~ 12522210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256421
CTGTAATAGAGTCCAAGTCGGGGATGGCATTAGGCCCGCTACACTTCTCCAGAGTTGTTGCCCTGAGGGTAGGCAGGTTCAGCACGGTTGGAGGAGGAGTCACTATGGGTTGACGGGCAGCTGCTGTAGACAACAAAACTGAGGCATCCTGGGTAGTCTTGCAGGTCTGTTCCGTCACCGCAGTTGTCGAGTCCTTTGTCGTCGTCACAAACCAGACTCATGGGAATGCACTTTCCATTACGGCAGTTGAAGTAGGGCTCCCCACTGCATTCAGACTGATTAAACCCTACAGAGCCATCATACAGTGACAatggtgtcaaaagtattcacctTCATTACTCAGGTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256421 True 349 lncRNA 0.50 2 12521485 12522210

Neighbor

gene id symbol gene type direction distance location
LOC103039330 LOC108434991 coding upstream 17193 12488762 ~ 12504292 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 271048 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 295005 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 959291 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 1218239 11273437 ~ 11303246 (+)
zbtb40 LOC107743242 coding downstream 25440 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 92710 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 101960 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 167605 12689815 ~ 12711044 (+)
atrip NA coding downstream 364247 12886457 ~ 12902687 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding upstream 2055 12518864 ~ 12519430 (+)
G189175 NA non-coding upstream 15573 12505356 ~ 12505912 (+)
G189122 NA non-coding upstream 110523 12408974 ~ 12410962 (+)
G189115 NA non-coding upstream 124379 12396550 ~ 12397106 (+)
G189101 NA non-coding upstream 175713 12335535 ~ 12345772 (+)
G189180 ldlrad2 non-coding downstream 797 12523007 ~ 12523914 (+)
G189182 NA non-coding downstream 4058 12526268 ~ 12526620 (+)
G189185 NA non-coding downstream 43363 12565573 ~ 12566136 (+)
G189186 NA non-coding downstream 71273 12593483 ~ 12597991 (+)
G189228 NA non-coding downstream 246934 12769144 ~ 12769538 (+)
G189141 NA other upstream 80752 12439603 ~ 12440733 (+)
G189073 hmces other upstream 285393 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 520822 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 1057005 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1431438 11089728 ~ 11090047 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 6829 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 294977 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 473462 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 892859 13415069 ~ 13427065 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other downstream 1451569 13973779 ~ 14044727 (+)

Expression


Co-expression Network