G189180 (ldlrad2)


Basic Information

Item Value
gene id G189180
gene name ldlrad2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12523007 ~ 12523914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256423
TCCGCATATCAAtaatggctccctgatgcccacaaGTCAGATACAATTTCCTGGAATTTAGCACATGCACACAGGCGACACAGACTTTTTTACCCAAACATGTGtgggaaagagaaggagaggaagacaAAGGCGCTATCCTAGTGTGCATAATGTgatttaaatgcatattaaagtGCATATgaaatttttgcaacttgggatgtctgcaatTATTCCTCGCCAAATAGACCATCTCGCCCACTCGTTAGGACTCCCACAGGTTAAAGGTTGAAGGTTATACCCTATTTCTTACCCAGTCTGAATGATGTGAAGTCTCCCACGAAGTCCACCCGGGGCTGGGTCCCTCTGGTCACCAATCGCAGGGTCAGATAGGGCCCAGTCGACAGGACCGGACGAGGCGGGCTCTTGCCACACAGCGGTGGGCCAATAGGGGGTGCCGTTTTATCCCGTCCATCGTAGAACTGGATATAGGAGCCAGCGTGGCAGGGGTCTGCCTCTGCAGCAGCACCCTCTCCAGGAGTGGGCTCCATTCGAGTTTCAGCCCGGGTCGGGCCTAAAAACGGTGGCCCCTTGGCGGACTCGGGCGAAAGAGGCACGGGGCTGAAGGGGGACACCCTCAGCAGGCTGTAGACGAGGAAGAAGCGGAAGTGGAACTGCACCTTGTCCCGGGGCGTGGCTGACAGCATGGTGAGGTGGCAGTCGGTGCCTTTGGTGACGAAGTAATACTTCCGTGACTCTTGGTGGGATCTGACGACCATGCCGTCCGCCTGAACCGTCTGGCCGCAGAAATCGGCCACATTCACTGTGGAGACATTTACCCACCCATCAGATTAATGTGCATTCCACAGTCTTTTCCTACAGTGATATAAGACTGTACGTGCAGAAGACGTACACAGACATCTGCG

Function

symbol description
ldlrad2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD2 (low density lipoprotein receptor class A domain containing 2).

NR:

description
low-density lipoprotein receptor class A domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256423 True 908 lncRNA 0.53 1 12523007 12523914

Neighbor

gene id symbol gene type direction distance location
LOC103039330 LOC108434991 coding upstream 18715 12488762 ~ 12504292 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 272570 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 296527 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 960813 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 1219761 11273437 ~ 11303246 (+)
zbtb40 LOC107743242 coding downstream 23736 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 91006 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 100256 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 165901 12689815 ~ 12711044 (+)
atrip NA coding downstream 362543 12886457 ~ 12902687 (+)
G189179 NA non-coding upstream 797 12521485 ~ 12522210 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding upstream 3577 12518864 ~ 12519430 (+)
G189175 NA non-coding upstream 17095 12505356 ~ 12505912 (+)
G189122 NA non-coding upstream 112045 12408974 ~ 12410962 (+)
G189115 NA non-coding upstream 125901 12396550 ~ 12397106 (+)
G189182 NA non-coding downstream 2354 12526268 ~ 12526620 (+)
G189185 NA non-coding downstream 41659 12565573 ~ 12566136 (+)
G189186 NA non-coding downstream 69569 12593483 ~ 12597991 (+)
G189228 NA non-coding downstream 245230 12769144 ~ 12769538 (+)
G189216 NA non-coding downstream 245667 12769581 ~ 12770649 (+)
G189141 NA other upstream 82274 12439603 ~ 12440733 (+)
G189073 hmces other upstream 286915 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 522344 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 1058527 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1432960 11089728 ~ 11090047 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 5125 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 293273 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 471758 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 891155 13415069 ~ 13427065 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other downstream 1449865 13973779 ~ 14044727 (+)

Expression


Co-expression Network