G189122


Basic Information

Item Value
gene id G189122
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12408974 ~ 12410962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256339
aaaaataaacttttctttcaaagtgaaacaagcgctggatgttaatctacacagatttctctcctgaaaacagtttatttggAACCCCCTTTAGTCTGACCTGGCCCTGGCCCAGTGAGATGGCACTCATTTTCTTGGAGAACTTCATGACGTCAGCGAATTTGTAGAGGTCAGCGGCGGGGTCTGTGCCAGGAGACAGCACGAAGATGAGTGGAGTGGACGGGGATGACTCCTGAAAGACCGCAGACAGATCCGAC

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU256339 True 257 lncRNA 0.48 2 12408974 12410962

Neighbor

gene id symbol gene type direction distance location
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 158537 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 182494 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 846780 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 1105728 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 1142614 11257158 ~ 11266360 (+)
LOC103039330 LOC108434991 coding downstream 77800 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 136688 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 203958 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 213208 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 278853 12689815 ~ 12711044 (+)
G189115 NA non-coding upstream 11868 12396550 ~ 12397106 (+)
G189101 NA non-coding upstream 63202 12335535 ~ 12345772 (+)
G189104 NA non-coding upstream 80515 12327614 ~ 12328459 (+)
G189066 NA non-coding upstream 149937 12256483 ~ 12259037 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding upstream 168736 12237830 ~ 12240238 (+)
G189175 NA non-coding downstream 94394 12505356 ~ 12505912 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding downstream 107902 12518864 ~ 12519430 (+)
G189179 NA non-coding downstream 110523 12521485 ~ 12522210 (+)
G189180 ldlrad2 non-coding downstream 112045 12523007 ~ 12523914 (+)
G189182 NA non-coding downstream 115306 12526268 ~ 12526620 (+)
G189073 hmces other upstream 172882 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 408311 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 944494 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1318927 11089728 ~ 11090047 (+)
G188771 NA other upstream 1556238 10848071 ~ 10852736 (+)
G189141 NA other downstream 28641 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 118077 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 406225 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 584710 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 1004107 13415069 ~ 13427065 (+)

Expression


Co-expression Network