G189066


Basic Information

Item Value
gene id G189066
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12256483 ~ 12259037 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256245
ACTTGGGGACAATCATATTGTTCCAAAATCTATTACTATAAGAACCAGTGTATGATTGATTACATATATAAGCACTGTAAAGCACTTTTCCCCACcgtcttatacacacacacacacacacacacacacacacacacacacacagacaaaaagaaGTTGTGCCGTGCTTCCCTCAAAGTAACAGAGAGATAAGAATCAGACAATAATATGACACAACGATAAGCACAATACTGACACAGAAAGCAGTGCAAAATACACACAGGAAACCTGCAgaccccatatatatatatgtatacttcTATAGATTCAATATATAATaatccatatacagctctggaaaaagggGCCACTTAATGTTAAgggttgagtttctttgattattttactaaactgaaaacctctggaatataatcaagaggaagaaggacctggcaccaggagtggcataaagttatccaaaagcagtgtgtaagactggtgggggagaacatgcctagatgcacgaaaactgtgattaaaaaccagggatattataccaaatattaatttctgaattcttaaaacgttatgaatatgaacttgttttctttgcattatttgaggtcttgaaatcttttttttttttttttatttcagccatttctcattttctgcaaatgctctaaatgacaatatttttatttggcatttgggagaaatgttgtccgtagtttacagaataaaacaacaatgttcattttactcctataaatagcaaaatcagagaaattgattcagaaactgaagtggtttcttaattttttttccagagctgtacattattGATATTCCTCAGGTCTGCTACACTTCTCACAGGTGTAAAACATGTTCTAAATAGTCCAGGCAGAACACAATAAACAGATTGTGGAAGATCTCCAGACTGTACTGTAGTCGAGTGATTGTAGAGTGAATGTTTGTGAGTAGTGTACATTTACCTTAAATCACTCTGGAAATGTGTCTACATCAATCAAATGAACGGACATAGTGTCAGAGGACGACTAATGTAGGATCAGTTGTAGCCTAGGGGACGAGATTCTtccaattcagtgttttttttttttatctgtttcctacattgtaaatgaatactgaaatcatccagataaataaagaaaacacataaggaatcatgtagtaacttaaaatagtgttaaacaaacctgtgaaaatactctgtgaagcattcagatgctcttatctggggttattaatctgttaacttgcggtttctgaggctggtaactctgatgaatttattCTGTGCAAGagagaaaactcttgctctcggtcttcctttcctgagccggtcctgatgagtgccagtttcatcatttttaacatttttgatgttttttttttttttttgaggatacttaaaatgttttggactgactgacattttttttctttatttagttgagtagttcttgcttctcataatctggattagaacattactcaaatactcaactctacctcttcacaactttacaactgatgctctcaaacacattaagaggcaagaaattcaagtaattaactcttgatgagttcggcacagctgttaactgaaagcctgaattccaggtgactcgacctcgtaaagctgactgagaaaatccagccaagatgtgcaaaactgtctaaccTAAGGATTATATATATCTTCACCATATCCAGCAACAGAAATGGTAGAAGGGTAGAATGTGTCTGGAATAGATCGCACAGTAACTCTTATCTCACTACCAGAACTAAAATCCTGAGTATTTAACACtaatagtgtgtgtgcgtggcTTGGGATGGTGTTGACCACTTCTAGATAGTATCCAGAAATATCCAGTAACTGGCCACAGCTGATCCTACATCAGTACTTCCCATCTGTGGGCCCTTGAGGGATGGAAGGTTAAAGAGCAGGGCAGTGCAGTGTACaggtttatactgtataatagttGCCGTAGATCAGGGTGGTTTGGTTGATGGTTGAGAGACAGGATCAGAACTCAGGCAGAAGACTCCAACATCTTTCCTCAGTGTTTCTGAGGTGCTTGGAGGCCAGAGGATCCCCGGAGAACAGGCAGTGAGACCAACGAGAGCTGACAGACAAACGGCGGGGTCAGAGGTGAGCCGGAACGGTCTGCAAGGCGTCTGCCGCCGATCTGTGCACGTTaacat

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU256245 True 2211 lncRNA 0.38 2 12256483 12259037

Neighbor

gene id symbol gene type direction distance location
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 6046 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 30003 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 694289 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 953237 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 990123 11257158 ~ 11266360 (+)
LOC103039330 LOC108434991 coding downstream 229725 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 288613 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 355883 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 365133 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 430778 12689815 ~ 12711044 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding upstream 16245 12237830 ~ 12240238 (+)
G189071 NA non-coding upstream 50500 12201419 ~ 12205983 (+)
G189025 NA non-coding upstream 212065 12044143 ~ 12044418 (+)
LOC111195378 NA non-coding upstream 449388 11806708 ~ 11807095 (+)
G188999 NA non-coding upstream 672604 11583465 ~ 11583879 (+)
G189104 NA non-coding downstream 68577 12327614 ~ 12328459 (+)
G189101 NA non-coding downstream 76498 12335535 ~ 12345772 (+)
G189115 NA non-coding downstream 137513 12396550 ~ 12397106 (+)
G189122 NA non-coding downstream 149937 12408974 ~ 12410962 (+)
G189175 NA non-coding downstream 246319 12505356 ~ 12505912 (+)
G189073 hmces other upstream 20391 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 255820 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 792003 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1166436 11089728 ~ 11090047 (+)
G188771 NA other upstream 1403747 10848071 ~ 10852736 (+)
G189141 NA other downstream 180566 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 270002 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 558150 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 736635 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 1156032 13415069 ~ 13427065 (+)

Expression


Co-expression Network