G189071


Basic Information

Item Value
gene id G189071
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12201419 ~ 12205983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256253
CTTTGAGGTTATCACACTCCTCCTCTAGACGGGCCTTGTCCTTGCTGACGGTCAGCAGCTGAGCTTCTCTTTTCTCCAGTCTGCTCGTGAGCTCGCTAATAACCTTTTGAAGCTCCAGTAGTTCACAGCTTGAGGTTCCTTTTTGCTCCTCGGTTATGGGCGGGGTCAGGGCTTCATCTGGGTCAGTTCTTAAGTTAGACAGGGTCAGATTTGAGCCAGACTCTTGCTCCACCTCCTGTAATTCTTCTGTCTGGTCACAATTTACCGGTGTTGCACTGCGGCCGCTTTCCTCCATCTCATTCTCCTCCAGTGTTTGGTCCTTTAAAGAGTCTGTCAATGCTAACTCGGCCTCTTCCTGCTCCTGATTGGTCGGTGGTGACAGTAGGGCAGGGGAAACAGGGGTGGGCCCGGCGGTGACCGATGCCAGTGTGCGATTTCCGGGAATCTCGTCATCCGAGTTGACCTCGCTGACACTGCGGCTGTCCAGCGACTGGACGCTAAAGGAGTCAATGCGTTCGAATGCATCTGAAGAAGACCCGCAGCTTTCCGTCAGCTTTGGGTAGTCGTCCAGACGGGGGAAATCACCGCAGGCTGAGGCAGACAGCAGCTGGAAGGAGCCTTGCATCAAATGCAGGCCTGCTTTAGCTTCAGCTGTTTCCTGTCTTGAGCTAGCTGAACTCTCGCTGATTACGCTTTCATGGTCCAGCACCTCAATATCACTGGTAGTGGAGGTACCAGAGGAGAAAGCGCTAACTGGAGGGGATGGGGTGTCACTCTGACGATCTTCTGCTTTAGGGTCTTTGGAGTCCAACATAATGTCTTTGGGCGGGCCTGAAAGAGTTTTGACTGGGCTTTTTGGCCCTGTAGGACCAGAATTACCAGTGTTTTCCACTGGTCCTGTCTCTATAGGCGATGGTGCATCCACTTGCGGGACCTCCAAAGTTAGCCTGGAATCCTCAgtctcctcacactcctcagaTTCTTCAGTTTTGTTCTCAACTTGCTCCGGTTCAGTCATTAGCTCTTGAGCAATCAATGGCTCAAGAACAACAGGCTCTTCCAGTTGTGGAATACTAGCTGAAAGTGATTGCTGTGGTACACTAACTGGTGGCGGCTCTAGTTCTTTCAGTATGACCTCCACCAGCTTGGTCTCTTCTGGTCCCATGCCGTCACATGTATCCGATTCTGGCTGAGAAAGTATGGTAGAGTCCACATCGTCTTTGCCAGCAGGTATTATCTCTTCGTCAGCTTTCTCCTGTATTCGAGGGTAAGATTTGGTCGGAGCCACAGACACCACCAGAGGCTTTTGGACTGTCTGGATGTCTCCAGGGGACAGGAAGGCACTGAAGAAGCTTTCGGATTCGTCAACCACAGTGCGAGTGACAGGCTTGGTGATGGCCTCTGACGAGGCGGGAAGAGTCGTTGGGCATTCCTCTGTGGGGGAATCCCACTGATTCCTTCCCCATCCTGTGGACACAGGGTTGCTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256253 True 1489 lncRNA 0.52 2 12201419 12205983

Neighbor

gene id symbol gene type direction distance location
LOC111195454 NA coding upstream 639225 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 898173 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 935059 11257158 ~ 11266360 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 1131064 10997339 ~ 11070355 (+)
LOC103041410 asic1b,LOC107569540 coding upstream 1461744 10738054 ~ 10739675 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 4762 12210745 ~ 12226480 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 39486 12245469 ~ 12250437 (+)
LOC103039330 LOC108434991 coding downstream 282779 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 341667 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 408937 12614920 ~ 12622920 (+)
G189025 NA non-coding upstream 157001 12044143 ~ 12044418 (+)
LOC111195378 NA non-coding upstream 394324 11806708 ~ 11807095 (+)
G188999 NA non-coding upstream 617540 11583465 ~ 11583879 (+)
G188964 NA non-coding upstream 777084 11369410 ~ 11424335 (+)
G188963 NA non-coding upstream 829770 11346874 ~ 11371649 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding downstream 31847 12237830 ~ 12240238 (+)
G189066 NA non-coding downstream 50500 12256483 ~ 12259037 (+)
G189104 NA non-coding downstream 121631 12327614 ~ 12328459 (+)
G189101 NA non-coding downstream 129552 12335535 ~ 12345772 (+)
G189115 NA non-coding downstream 190567 12396550 ~ 12397106 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 200756 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 736939 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1111372 11089728 ~ 11090047 (+)
G188771 NA other upstream 1348683 10848071 ~ 10852736 (+)
G188624 NA other upstream 1897754 10303360 ~ 10303665 (+)
G189073 hmces other downstream 24804 12230787 ~ 12236092 (+)
G189141 NA other downstream 233620 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 323056 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 611204 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 789689 12995672 ~ 12996904 (+)

Expression


Co-expression Network