G189074 (tada3,tada3l,LOC107656064,LOC107753868,LOC107600314)


Basic Information

Item Value
gene id G189074
gene name tada3,tada3l,LOC107656064,LOC107753868,LOC107600314
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12237830 ~ 12240238 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256262
gacctcaaatcatgcaaataaaacaagttcatattcaaagttTAAAGATATTAgggggaataaccctggttggtttttaatcacagttttcatgcatcttggtgtgttctcctccaccagtcttacacactgcttttggataactttatgctactcactcctggtgaaaaaattcaagcagttcagtttggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcatcctttttaagtggtctcttatttttccagagctgtatatataaaaaatatctagGTGTATCTTGTCTTGTCATCTAGTCACGTCTGTGTTTTTGCATTGGCGGAAACTGGAAATCAGCCCAAATTCCCAATCTTTCTATAGCATATTTATCCTTACCATACAGCGATATAAAACAGTACATAAACAGCTTATTATTGATTTGAggagaaggggaaaaaaaaaagttaaaatgtcaGACTTGTCTAGAACCAGCCCTGATACCAGCCTAAGTTTCATATTATTGTTTGTTAATGTTAGTAAGCTGGTTGACCTCcctattaaacaaacaaacaaaaaaataaaactctggTCCCCAGGGCACACCAGCACAATATCACAGTCAGTCCTCTGTCTTCTTCTCTTTATCCATCCAATAGTTTGAGGatgctctccctctctttcaggGCCTTCCACGCCTGATCCTTTTCTTTCTTGGTTGGAGTGCGTTTCTTCTGCCTGGCTGCCATGATGCGACGGAAGGCCTCCATGACCTCGTTGTCGGCCACTCGGACGCGCTGCCGCAGCTCCTGCTTTCTCATCTCCTCTCGTGCTAATcGTAGAAGCTCCTGTTTGCGTGCACGATTGTGGGCAGTCAGAGCCTTCAGCTCCGCCTGCCTCTTCTGAAGCTCGGCCAGAACCTCATCCTCAGAGTCTCCACCTGCACTCTGCCTCTCCTCTGAATCCAGCAGGCCCTGAGAAACCAACTCCTCCTTAATCCGAGCTTCCAGAGAACGAGTGTGAGGCACACTGAAGGCTTTTCCCTGGCTGCGAGGTGATGTCCCAGCCCCATCATCTTTCACTGGCATGTCTGGGATGGGGGAATCCTCCATGGGGGATATGATATTCt

Function

symbol description
tada3l Predicted to enable transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in histone H3 acetylation; histone H4 acetylation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and SAGA complex. Orthologous to human TADA3 (transcriptional adaptor 3).
tada3 Enables nuclear receptor binding activity; protein domain specific binding activity; and transcription coactivator activity. Involved in histone H3 acetylation; positive regulation of gene expression; and positive regulation of transcription, DNA-templated. Located in nucleoplasm. Part of Ada2/Gcn5/Ada3 transcription activator complex; SAGA complex; and transcription factor TFTC complex.

NR:

description
PREDICTED: transcriptional adapter 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256262 True 1156 lncRNA 0.44 3 12237830 12240238

Neighbor

gene id symbol gene type direction distance location
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 11350 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 675636 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 934584 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 971470 11257158 ~ 11266360 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding upstream 1167475 10997339 ~ 11070355 (+)
LOC103043660 arpc4,LOC103043660,LOC103358720 coding downstream 5231 12245469 ~ 12250437 (+)
LOC103039330 LOC108434991 coding downstream 248524 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 307412 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 374682 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 383932 12624170 ~ 12655103 (+)
G189071 NA non-coding upstream 31847 12201419 ~ 12205983 (+)
G189025 NA non-coding upstream 193412 12044143 ~ 12044418 (+)
LOC111195378 NA non-coding upstream 430735 11806708 ~ 11807095 (+)
G188999 NA non-coding upstream 653951 11583465 ~ 11583879 (+)
G188964 NA non-coding upstream 813495 11369410 ~ 11424335 (+)
G189066 NA non-coding downstream 16245 12256483 ~ 12259037 (+)
G189104 NA non-coding downstream 87376 12327614 ~ 12328459 (+)
G189101 NA non-coding downstream 95297 12335535 ~ 12345772 (+)
G189115 NA non-coding downstream 156312 12396550 ~ 12397106 (+)
G189122 NA non-coding downstream 168736 12408974 ~ 12410962 (+)
G189073 hmces other upstream 1738 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 237167 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 773350 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1147783 11089728 ~ 11090047 (+)
G188771 NA other upstream 1385094 10848071 ~ 10852736 (+)
G189141 NA other downstream 199365 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 288801 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 576949 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 755434 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 1174831 13415069 ~ 13427065 (+)

Expression


Co-expression Network