G189104


Basic Information

Item Value
gene id G189104
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12327614 ~ 12328459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256316
ccacacacacaccaaaacacaccacaccactcTACAcgtaccacacactacacacacaccacacatacactacacacacaccaaaacacaccacaccacactacacgtaccacacaccacacacaccacacatacactacacacacaccaaaacacaccacacacactacacacaccacagcaacaccttagcagccaacacagacaccatagcaacaaccacagacaacatagcaacaccttatttACCACCTAAAACActtcagcaaccacctagtaaccacttagAAACTACATAGCTCTGTTAGAACACCAGGTGGTGAACGTGATCTTGATAATGTCTTGC
>TU256318
ccacaccacactacacgtaccacacacacaccaaaacacaccacaccacacacacacactacacacacaccaaaacacaccacaccactctacacgtaccacacactacacacacaccacacatacactacacacacaccaaaacacaccacacacactacacacaccacagcaacaccttagcagccaacacagacaccatagcaacaaccacagacaacatagcaacaccttatttACCACCTAAAACActtcagcaaccacctagtaaccacttagAAACTACATAGCTCTGTTAGAACACCAGGTGGTGAACGTGATCTTGATAATGTCTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256316 True 346 lncRNA 0.46 3 12327759 12328459
TU256318 False 337 lncRNA 0.46 3 12327614 12328459

Neighbor

gene id symbol gene type direction distance location
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 77177 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 101134 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 765420 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 1024368 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 1061254 11257158 ~ 11266360 (+)
LOC103039330 LOC108434991 coding downstream 160303 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 219191 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 286461 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 295711 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 361356 12689815 ~ 12711044 (+)
G189066 NA non-coding upstream 68577 12256483 ~ 12259037 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding upstream 87376 12237830 ~ 12240238 (+)
G189071 NA non-coding upstream 121631 12201419 ~ 12205983 (+)
G189025 NA non-coding upstream 283196 12044143 ~ 12044418 (+)
LOC111195378 NA non-coding upstream 520519 11806708 ~ 11807095 (+)
G189101 NA non-coding downstream 7076 12335535 ~ 12345772 (+)
G189115 NA non-coding downstream 68091 12396550 ~ 12397106 (+)
G189122 NA non-coding downstream 80515 12408974 ~ 12410962 (+)
G189175 NA non-coding downstream 176897 12505356 ~ 12505912 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding downstream 190405 12518864 ~ 12519430 (+)
G189073 hmces other upstream 91522 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 326951 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 863134 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1237567 11089728 ~ 11090047 (+)
G188771 NA other upstream 1474878 10848071 ~ 10852736 (+)
G189141 NA other downstream 111144 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 200580 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 488728 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 667213 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 1086610 13415069 ~ 13427065 (+)

Expression


Co-expression Network