G189101


Basic Information

Item Value
gene id G189101
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12335535 ~ 12345772 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256311
GTCCTAACACTAGTGATCAGTGGCAAACCGTGGGAGCCGCGCAGCTGCTGTGCCCCCTCAGCAACTTTACACCAGCGTCCTCCtccacactgatacacacatcACTTCTCCTTCTTCACTCATCTGTCCGTTCGCCTTCCGTCCATCTGTCCTTCATTCTGTTCCTGCATTTTCCCTCATTTTCCATTTCTGTCTTCTTTACTTCTGACTAATtcattaatccatccatccttaAGCAGCTGATGTCTCTGCGCCGCTCCGGCGCTCCTCACTGGCTGTTACAGACCGTGCTCTTCCCTCCGGCCGCCGCCGCTTTCTTCCGTCTCTTGTTGAGCAGCGGATTGCTGGACGTGTCCAGGTCCTTGATCTTCACCTGGTCGTAGTCCACACGCATGGTGGCCAGAGCACTTGTCATCTCc
>TU256312
GTCCTAACACTAGTGATCAGTGGCAAACCGTGGGAGCCGCGCAGCTGCTGTGCCCCCTCAGCAACTTTACACCAGCGTCCTCCtccacactgatacacacatcACTTCTCCTTCTTCACTCATCTGTCCGTCCGTCCATCTGTCCTTCATTCTGTTCCTGCATTTTCCCTCATTTTCCATTTCTGTCTTCTTTACTTCTGACTAATtcattaatccatccatccttaAGCAGCTGATGTCTCTGCGCCGCTCCGGCGCTCCTCACTGGCTGTTACAGACCGTGCTCTTCCCTCCGGCCGCCGCCGCTTTCTTCCGTCTCTTGTTGAGCAGCGGATTGCTGGACGTGTCCAGGTCCTTGATCTTCACCTGGTCGTAGTCCACACGCATGGTGGCCAGAGCACTTGTCATCTCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256311 True 419 lncRNA 0.54 2 12335535 12345772
TU256312 False 412 lncRNA 0.54 2 12335535 12345772

Neighbor

gene id symbol gene type direction distance location
LOC103043660 arpc4,LOC103043660,LOC103358720 coding upstream 85098 12245469 ~ 12250437 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding upstream 109055 12210745 ~ 12226480 (+)
LOC111195454 NA coding upstream 773341 11559382 ~ 11562194 (+)
LOC103022498 LOC108434863 coding upstream 1032289 11273437 ~ 11303246 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding upstream 1069175 11257158 ~ 11266360 (+)
LOC103039330 LOC108434991 coding downstream 142990 12488762 ~ 12504292 (+)
zbtb40 LOC107743242 coding downstream 201878 12547650 ~ 12565023 (+)
psma5 psma5 coding downstream 269148 12614920 ~ 12622920 (+)
sort1 sort1 coding downstream 278398 12624170 ~ 12655103 (+)
rrp9 rrp9 coding downstream 344043 12689815 ~ 12711044 (+)
G189104 NA non-coding upstream 7076 12327614 ~ 12328459 (+)
G189066 NA non-coding upstream 76498 12256483 ~ 12259037 (+)
G189074 tada3,tada3l,LOC107656064,LOC107753868,LOC107600314 non-coding upstream 95297 12237830 ~ 12240238 (+)
G189071 NA non-coding upstream 129552 12201419 ~ 12205983 (+)
G189025 NA non-coding upstream 291117 12044143 ~ 12044418 (+)
G189115 NA non-coding downstream 50778 12396550 ~ 12397106 (+)
G189122 NA non-coding downstream 63202 12408974 ~ 12410962 (+)
G189175 NA non-coding downstream 159584 12505356 ~ 12505912 (+)
G189178 ldlrad2,LOC107686014,LOC107751250,LOC107582454 non-coding downstream 173092 12518864 ~ 12519430 (+)
G189179 NA non-coding downstream 175713 12521485 ~ 12522210 (+)
G189073 hmces other upstream 99443 12230787 ~ 12236092 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other upstream 334872 11690872 ~ 12000663 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other upstream 871055 11451379 ~ 11464480 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other upstream 1245488 11089728 ~ 11090047 (+)
G188771 NA other upstream 1482799 10848071 ~ 10852736 (+)
G189141 NA other downstream 93831 12439603 ~ 12440733 (+)
usp48 usp48,LOC107743244,LOC107659552 other downstream 183267 12529039 ~ 12546452 (+)
LOC111195379 cenpp other downstream 471415 12817187 ~ 12820082 (+)
G189268 LOC106583855 other downstream 649900 12995672 ~ 12996904 (+)
LOC103033837 pmel other downstream 1069297 13415069 ~ 13427065 (+)

Expression


Co-expression Network