Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007254542.3 |
| length | 1166 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 10 |
| gene id | psma5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035918.1 |
| NCBI id | CM008321.1 |
| chromosome length | 32506130 |
| location | 12614920 ~ 12622920 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019773 | proteasome core complex, alpha-subunit complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02729 | PSMA5; 20S proteasome subunit alpha 5 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU256439 | lncRNA | upstream | 16929 | 12593483 ~ 12597991 (+) | True | G189186 |
| TU256435 | lncRNA | upstream | 48784 | 12565573 ~ 12566136 (+) | True | G189185 |
| TU256429 | lncRNA | upstream | 88300 | 12526268 ~ 12526620 (+) | True | G189182 |
| TU256423 | lncRNA | upstream | 91006 | 12523007 ~ 12523914 (+) | True | G189180 |
| TU256421 | lncRNA | upstream | 92710 | 12521485 ~ 12522210 (+) | True | G189179 |
| TU256486 | lncRNA | downstream | 146224 | 12769144 ~ 12769538 (+) | True | G189228 |
| TU256474 | lncRNA | downstream | 146661 | 12769581 ~ 12770649 (+) | True | G189216 |
| TU256481 | lncRNA | downstream | 194267 | 12817187 ~ 12819525 (+) | False | LOC111195379 |
| TU256497 | lncRNA | downstream | 237603 | 12860523 ~ 12861588 (+) | True | G189239 |
| TU256503 | lncRNA | downstream | 252974 | 12875894 ~ 12876136 (+) | True | G189243 |
| XM_022682388.1 | mRNA | upstream | 49897 | 12547650 ~ 12565023 (+) | True | zbtb40 |
| XM_022682390.1 | mRNA | upstream | 49897 | 12547650 ~ 12565023 (+) | False | zbtb40 |
| XM_022682389.1 | mRNA | upstream | 49897 | 12547650 ~ 12565023 (+) | False | zbtb40 |
| XM_015607192.2 | mRNA | upstream | 68468 | 12529039 ~ 12546452 (+) | False | usp48 |
| XM_007254538.3 | mRNA | upstream | 68468 | 12529121 ~ 12546452 (+) | True | usp48 |
| XM_022682393.1 | mRNA | downstream | 1250 | 12624170 ~ 12655103 (+) | True | sort1 |
| XM_007254545.3 | mRNA | downstream | 66895 | 12689815 ~ 12711044 (+) | True | rrp9 |
| XM_007254547.3 | mRNA | downstream | 66895 | 12689815 ~ 12711044 (+) | False | rrp9 |
| XM_022682396.1 | mRNA | downstream | 194638 | 12817558 ~ 12820082 (+) | True | LOC111195379 |
| XM_007229609.3 | mRNA | downstream | 263537 | 12886457 ~ 12902687 (+) | True | atrip |
| XR_002651607.1 | other | upstream | 69819 | 12530547 ~ 12545101 (+) | False | usp48 |
| TU256360 | other | upstream | 174187 | 12439603 ~ 12440733 (+) | True | G189141 |
| TU256257 | other | upstream | 378828 | 12233201 ~ 12236092 (+) | False | G189073 |
| TU256169 | other | upstream | 614267 | 11690886 ~ 12000653 (+) | False | fam19a1 |
| TU256538 | other | downstream | 372752 | 12995672 ~ 12996904 (+) | True | G189268 |
| XR_002651609.1 | other | downstream | 792149 | 13415069 ~ 13427065 (+) | False | LOC103033837 |
| TU257060 | other | downstream | 1484382 | 14107302 ~ 14108108 (+) | True | G189621 |
| TU257621 | other | downstream | 2739772 | 15362692 ~ 15365000 (+) | True | G190050 |
| TU257667 | other | downstream | 3088031 | 15710951 ~ 15721041 (+) | True | map1lc3a |
