G190050


Basic Information

Item Value
gene id G190050
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15362692 ~ 15365000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257621
TGATATCGTATCGTGATAATACTGTATTGTTATAATATCCAGGTGGGCGGAGTTTCTCACCAGGGTGCGTCTGGGTAGGGGGTGAGGAGCGCTGGGACAGGAGGAGCTCCCGTTGGAGTCCAGGCTGAAGAATCGGGGGGAGgttggtgattggctgaaagaTCTGGGGGAGGTCGGTGATTGGCTGGTGTGACGTCCTGAACTGCTGATGGGAGGAGTCTGATACAGGAAGCTGCTCTCCCCATCCGCTCGGAAACCTGCAGCGCAAACAGAATTCAAATAGAATAACTCACCTCGACTCACCATGACTTGCCATAATCCCTCATAACTCACCACAACTCACCACAACTCACCATTACTCATAACAACTCACCACAACTCACCATTACTCATAACAACTCACCACAACTCACTATAACTCACCACAACTCACCATAACTCCCTCATAACTCACCACAACTTACCATAACTCACCACAACTCACCACAACTCACCATAACTCCCTATAACTTTCCACAACTCACTTTAACTCCCTCTAACTCACCACAACTTACCATAACTCACCACAACTCACCATAACCCACTATAACTCACCACAACTCACCATTACTCATAACAACTCACCACAACTTACCATAACTCACCACAACTCACCATAACTCACTATAACTCACCACAACTCACCACAACTCACCATTACTCATAACAACTCACCACAACTCACTATAACTCACCACAACTCACCACAACTTACCATACCAGAGCCGGGACCAGGgcgcagacagagaggcttaaccgaccgtctgcgagctgcaaagagacgttacctagataccaatgtattcagactgtgtctgtcccccgagtcaaacaaaaacaccaaaaaactaaaacagtaaatctaaataacttaacttatattaaacaatcatatccagactgtagtactaacatttcaagcctaaagattggtttacttaatatcagatctctaaattcaaaagcagttctggtgaatgaaatgataactgatcagaaattcgatgttctgtgtctgacagaaacctggattaggccaaatgaatatgtagcattaaatgaagccacccctgcaggctataattatatacacaatcagAGACtgtccggtagaggaggtggggtctgcatatttttccaaagtaccttagttagcaatcagaaacactatgataattttacttcttttgagcttctttacaccagtataattaatccagttacaaaaaagaatgcattttctttaattaacatctacagaccaccagggccctatttagaatttttagaagaatttagtgattttgtcacagacttagcagtaagtaatgataaagtgattatagttggagacttcaacattcatttcgaaaaaattggatgatccattaaaaaaggcattcacatcgattttagactcagttggtattattcaaaatataacaggacctactcattactgtaatcatactctggatttagttttgaccctgggtgtgagcatagataacccgaatattcgttctcaaacctccgcaatttcagatcattaccttattcatttaaattacatcttagtcataatatacgtacatcccctagctactctgtaaaacgttcaattacgccattttacagcccaacaatttacagataagcttccagacttatcaactctaatgtactctcctgtagacccagtagaactagacaaactaaccgaaggtttagaaaatacctttcgctctaccttagatgttgtagcaccccttaaacacaaaatagagagacagaaaaagctcgcaccgtggtacaatgatcaaactcgtaccttaaaagcagttagtacgaaatttagagcgtaaatatcgatcaactaaactggaagtgtttcactctgcgtggaaagacagtcttgttaaatatagaaaagaacttaataaagcccgctcagcatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257621 True 1998 TUCP 0.40 3 15362692 15365000

Neighbor

gene id symbol gene type direction distance location
LOC103025870 NA coding upstream 11726 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 291488 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 348812 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 453746 14899354 ~ 14908946 (+)
LOC103047572 LOC108424606 coding upstream 473925 14859484 ~ 14888767 (+)
utp3 NA coding downstream 141398 15506398 ~ 15517440 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding downstream 163310 15528310 ~ 15688721 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 420446 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 437619 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 473457 15838457 ~ 15844270 (+)
G190041 NA non-coding upstream 5862 15352985 ~ 15356830 (+)
G190037 dynlrb1,LOC106565026 non-coding upstream 40458 15318697 ~ 15322234 (+)
G190034 NA non-coding upstream 48696 15313795 ~ 15313996 (+)
G190030 NA non-coding upstream 54297 15307943 ~ 15308395 (+)
G190024 NA non-coding upstream 64332 15296683 ~ 15298360 (+)
G190052 NA non-coding downstream 2806 15367806 ~ 15368557 (+)
G190063 NA non-coding downstream 55295 15420295 ~ 15423282 (+)
G190067 NA non-coding downstream 80120 15445120 ~ 15445765 (+)
G190068 NA non-coding downstream 81216 15446216 ~ 15471536 (+)
G190043 ppcs non-coding downstream 125071 15490071 ~ 15520066 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 518416 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1191071 14114204 ~ 14171621 (+)
G189621 NA other upstream 1254584 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1317965 13973779 ~ 14044727 (+)
LOC103033837 pmel other upstream 1935627 13415069 ~ 13427065 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 345930 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 412805 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1465909 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1754945 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1816122 17181122 ~ 17185128 (+)

Expression


Co-expression Network