foxj3 (foxj3,LOC107551120,LOC107749445)


Basic Information

Item Value
gene id foxj3
gene name foxj3,LOC107551120,LOC107749445
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15528310 ~ 15688721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682452.1
GGAGAGGCGCAGCGGAGCCGCGGACACACCGGCGCTGAGGGACGGCGGAGTCTCCACCGCACGACACGCGCACAGCAGCACGGGCACCTCTGGAACGAGAGCGGCCGGGGAGCTTGTTTTTAACATATTTCGCCGAAAAGGACGTGGAGGGAGCGGCAGAGAGCCGGGCCGCGCCGCTGTGCAGACAGGGCAGCCGCTGCTGAAGGGAGAAAACCCGGGTCTAACTGAGAGCCGTTGAGGCACTCGGGCTCCGACACGCACCTCCTCCGATCTCCATCCGCCCCCCCACCCACGCCCCACCGAGCCGCCGCCATGACCTCGGAGCTGGAGAGCAGTTTGACCTCCATGGACTGGCTGCCGCAGCTGACCATGCGGGCGGCCATCCAGAAGGCAGACGCTCAGAACGCACACGGACCCGGCATGGCCAAGAAGAGCGCCCTGCTGGACCCCAACACCACGCTGGACCAGGAGGAGGTCCAGCAGCACAAGGACGGGAAACCACCGTACAGCTACGCCAGCCTCATCACCTTCGCCATCAACAGCTCGCCAAAGAAGAAGATGACCCTGAGCGAGATCTACCAGTGGATCTGCGATAATTTCCCCTACTACAGGGAGGCGGGCAGCGGCTGGAAGAACTCCATACGGCACAATCTCTCGCTGAACAAGTGTTTTCTTAAAGTGCCTCGCTCCAAAGATGACCCGGGAAAGGGTTCGTACTGGGCGATTGACACGAATCCTAAGGAGGACACGTTGCCCACGCGGCCCAAGAAGAGGCCACGGTCTGGAGAacgggCGTCCACACCCTACAGCCTGGAGTCGGATTCTCTGGGAATGGACTGCATCATCTCCGGAAGTGCCTCTCCGACGTTGGCAATCAACACTGTGACTAACAAGGTGGCGTTGTATAACCCAGATCAGGATGGGAGTGACAGTCCGAGAAGCAGCCTTAACAACAGCCTGTCTGACCAGAGTCTGGCCTCGGTTAATCTCAACAGCGTGGGGAGTGTGCACAGCTACACGCCGGTGACGAGTCATCCCGAGCCGGTGTCTCAGTCTCTGagtctacagcagcagcagcagcagcagcagccccagTACAGCATCCCCGAGAGAGACAAGCAGCTCCTCTTCTCCGACTTCGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGTCTGTCTTTGAGCAGTCCTTCAGCCAACAGGgtttgatgggCATGCCGTCGGAGTCGTCTCAGCAGACACACACCTCCTGCTCCTACCAGCACTCCCCCAGCAgcaccatcagcaccatcagcacACACTCCCACAACAACCAGAACAGCATCTCCAACTCCCACCCCAACAGCATCCCGACCAGCGGCAGCCAGGTGCCCCTCACCCACCCCCACAACTCCCCCCACGCCCAGCACCTGCCCCAGCACGGCCCCCACGCCCAGCACCCGCACGCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCACTCCCAGCAGCCCCAACAACACCAACAGCACCAGAACCTCTCGCACCAGCCCCATCCAGCCCAGCAACAGATGCCCTGCAGCACCGgtttGCCGAACGACTGGTACCCAAACCTGGATACACTGAAAGAGAGCTGTCGCATTGCCAGCAGCTACAACTGGGCCGATGTGGACCTCTCACCATTTCAAGGTTTGAGGGAGAGTATGCGGCAGGCAGAGCTGAATAACTGGTCTCTGGAGCCGACCCAAATCGCAGACCTCTGCTCCTCCATCAACCAGTTTTTTGCCCGCACTGGAGTCATCCAGCCACAGGGGGCAGTGCAGTCTCCTGTCTGTCACAGCACCATGCACTCCAACAAGCCCAGCCAGCACATCAATACAGGAAATATGTATATGGACTCGAGACAGACCATGTCCTCTATGATGGGTCCTCCGGGATATCCACACATGCCTATGAGCAGCGCGGGGAACGCCATGACagGTCATCACCCGCAGATGAACCAGCAGCACATGATGGCTACCGGGAACTTTCAGATGCGGCGCATGCCCGCCGAGGACATCCAGGACGACTTCGACTGGGACTCCATCGTCTAGCGCTCGCCGCCAGGGAGAAGAGTGGTGCaggaaaacgagagagagagaaagagagagagacgcgtggaggaggagaagaagaagaaagagagagtgtacgtgaaagagaatagagagagagaaaatagagagagagagagagggctagTCCCCAGCTGTCTGCACGGCCCGAGGCAGGAGGCAGATCGATACCGGGAGcttcaaaaaataaatgaataaataaataaataaaaaagaaaataagaagagGAAACGAGTGCAGGTGACGTTTTGAAACGAGCTGAAAGAGACTCCTGTTGTCGTGGTGTTTTTaggaaattaaagaaaaaactaagaaacaaaaaaaaaaaagttactttgaaGACAATCACATTTACACTAGGACATGTTTAAGTGATTGCTTTCGCGCTCGTCCCCGAAACGGGAACGTGTGCGCTCATGTTCATGTTAAATGTAAAACCCAACCCCCTTATCTGTGGCAaaaccccctcctcctcctcctccccccctCCTTTACTGTGTCCCAACAAAAACTGCCTTTCTGCAAATCTGCTCGTAGGCCAAGCTCTTCCCTGCCCTTTAACTGTTGTgtgagtttttacatttttatttttctctgtttttgcttcattttatttggttttatttggGTGGGAGTGATATGTTTTGGCttgttctctctcctctcttggCTCTCATTCGTCGTGTGATGATTCCCTCT

Function

symbol description
foxj3 Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human FOXJ3 (forkhead box J3).

NR:

description
PREDICTED: forkhead box protein J3-like

GO: NA

KEGG:

id description
K09403 FOXJ2_3; forkhead box protein J2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682452.1 True 2959 mRNA 0.57 12 15528310 15688721

Neighbor

gene id symbol gene type direction distance location
utp3 NA coding upstream 10870 15506398 ~ 15517440 (+)
LOC103025870 NA coding upstream 177344 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 457106 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 514430 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 619364 14899354 ~ 14908946 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 96725 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 113898 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 149736 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 504422 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 618131 16306852 ~ 16403416 (+)
G190043 ppcs non-coding upstream 8244 15490071 ~ 15520066 (+)
G190068 NA non-coding upstream 56774 15446216 ~ 15471536 (+)
G190067 NA non-coding upstream 82545 15445120 ~ 15445765 (+)
G190063 NA non-coding upstream 105028 15420295 ~ 15423282 (+)
G190052 NA non-coding upstream 159753 15367806 ~ 15368557 (+)
G190104 NA non-coding downstream 76432 15765153 ~ 15766268 (+)
G190116 NA non-coding downstream 121824 15810545 ~ 15815166 (+)
G190125 NA non-coding downstream 157805 15846526 ~ 15847008 (+)
G190133 NA non-coding downstream 175619 15864340 ~ 15866179 (+)
G190137 NA non-coding downstream 220314 15909035 ~ 15909622 (+)
G190050 NA other upstream 163310 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 684034 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1356689 14114204 ~ 14171621 (+)
G189621 NA other upstream 1420202 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1483583 13973779 ~ 14044727 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 22209 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 89084 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1142188 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1431224 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1492401 17181122 ~ 17185128 (+)

Expression


Co-expression Network