G190116


Basic Information

Item Value
gene id G190116
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15810545 ~ 15815166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257707
AGCTTTAACATCCTTTATTGATGATTTTGTGATACATTGACTTTATTACTGACAGTTTTCCATAGTTATACTTTACAACCATAAAAGTGTTGAAGCTCTTAAAACTCACATTCAGCTCAGCTGGATCAACTGCTAGTGAATCTGGATATTTACATATTGctgtctaacacacacacacacacacacacacacactgtcttaatctctctctctcttacacacactcttacgcACACACAGTGAGAAAACTGTTCTTCGTAAAATGTTTATAGTGACATTCAGTTTGAgtttttattatctattattatctgttattattgttcttagtattgttgttattattataattattgttcTTGTTAACAAAATATAGCTTTACAAATAGACTCTCAGTGAAACAACCTGCgagactgaacacacacacacacacacacacacacacacacacacacagttttacaTTATGTTTACACATGtactgcacaacacacacaccaaaaaatatacagcttattattacagatacagatacacacacacacacacacacacactctgtaaacacacatacactacagtGAGCTATTTCTCTGaataacacagatttaaacATTAATCACGTAGTAAATGGCTCAGACAGTGTGCTGAAATACATTCAGGTGAAGTTGCTGCTGCAgattcaattcagttcagttaaacTCTGGAAATCTCTGGCAGATGTTTCCAgatgtttcacattttcactctCAGCTATGCTGACTATACCCCTAATCCataaaccctaaaccttaatccCTAATCCCTAAACTCTAAACCCTAATCCATAAACCCTGATCCCTAATCTCTAACTTCATTTCCTAAAACTAAACTGCAGGGTTTGTTTTGGTGcaggtttatatataaatatttgatgCAGTGTTTAAATCAGACACTGGGTGGCAGTGCTGAGCACTGTAACATTAGCtgtaacattatgaccaccttgtTTTTTACACCTTTATTATCCAGTTTTATCAGCTCCATTGATCAGGcataggacactttgtagttctataattccAGACTGTAGTTCCTACAGGACACAGCCTACAGGACGTGGACAAAGCCCACGGGGTACAGATGCAACCTATAAGATGCATATGCAACTCTACAGGACATGGACAAAGCCCACAGGATGTTGCCCTCAGGATGTAAACGCCGGACACAGCCTACAGGAAACTTCCCATAGAACTCAGCCTACAGGACACAGACACTGCCTACAAGATGCAGTCTACAATAAAGTAGACTGCCTACAATGCTGTGTCCTGCCTTTAGGGAGCAGACAcagcctacaggacactgtctacaggatgctgcccacaggatgcagcATACAGGAGACTGCCCACAAGGTGCAGACGCAGCCTACAGTATGTAAACGTAGCCTACAGGATGCATCCTACAGGACATTTCTGTCCACTGGATGTGGACACTGCCCATAGGACGTAGATGCAGCCCAgagaacactgcccacaggatacaGACACTACCTACAAGATGCAGCCTACAGGACATAGACacagcccacaggatgctgccttcaGGGAGCAGACGCAGCCTACACGATGCAAATGCAGGCTACAGGATGCAGcatacaggacactgcccacaggatgcagACTCAGCCTACGGGATGCAGACGCAGCCTATGGGATGCAAACGTAGCCCACAGGATAATTCCTACAGGACATGGACGCTGTACACTGGATGCGGACAGTGCCCATAGGGTGCAGCCCACAGGACGCCAtacacaggacactgcccacatgATGCGGGCAAAGTTCTCAGAAGTCACCCCTTAGGACACAGCCTACAGAAAGCAGCCCACAGGACACCGCATCCAGCCTATCGGATGTTGCCAACAGGATAATGCCCACAGGACGTATCCAACAGGACATGGAGCCAGCCTACAGGAGCCAGCCTATAGGACATGGAtgctgttggctggatatttctggttagTGAACTattcacacacactaacacctcatgcaccaccaccatgctaatcagtggaGCTAAAAGATTTGGATAATTAGTGTTGAAACGTGGTTTTAGTAAAGGTGGTGCGTATTGGTGCATCCTACTGTAGAACCGTGATTTTACCGCTGATAATAATCAGGGAACGTTTCTCTCTGTTCACTAATTCCAGATCAGAAACTCTACACTAACTTAACTGTTGGTCCTTCAGAAATTTGGTTTTATAATTATTGCTTATTAATGAGAACAGAATTCCGAACacatctaatctaatctaatctaatctaaactaatataaagtatatttttactatcagcagattcttcaggtgtttttattttactgatgtTTAGAAACCTCTCTGTGCAAATGCTGTGCATATATGGGTGTCTGATTTGGGGGAGGGTCTCTGTGCTTCAGTCTGATTTGGGGGAGGGTCTCTGTGCCTCAGTCTGATTTGGGGGCGGGTCTCTGTGCTTCAGTCTGATTTGGGGGCGGGTCTCTTGTGCTTCAGTCTTGATTTGGGGGAGGGTCCTCTGTGCTTCAGTCTTGATTTGGGGGCGGGTCTCTGTGCTTCAGTCTGATTTGGGGGAGGGTCTCTGTGCCTCAGTCTGATCTGGGGGCGGATCTCTGTGCTTCAGTCTGATTTGGGGGAGGGTCTCTATGCTTCAGTCTGATGTGGGGGCAGGTCTCTGTGCTTCAGTCTGATTTGGGGGAGGGTCTCTGTGCTTCAGTCTGATTTGGGGGCGGGTCTCTGTGCTTCAGTCTGCTTTGGGGGGGGTCTCTGTGGTTCAGTCTGATTTGGGGATGTGTCTCTCTTTGTATGGTTCAGTCTGATTCGGGGACGTGTCTCTCTGCAAGCGGTTCAGTCTGATTTGGGGGGACGTATCTCTTTGTGTGTGGTTCAGTCTGATTCGGGGATGTGTCTCTCTGTGAGTGGTTTTAACTGATTCGGGTACGTGTCTCTCTGCGAGTGGTTTAATCTGATACTGGGACGTGTCTCTCTGTTTGGTTCAGTCTGATTCGGGGGTGGTGGGGTTCTGGTAGCTGGTCCGGTAGCAGCTGTTGGGTGAGAGGGTATTTGGGTCAGATGGAGGGTTGTCAATGGTCAGGCCTCGAGGGGGACGTGGAGGACGTTGTGGAGGTAATGGTGACCCTGCGATGTTCTTGTTGAGGATGTAGCGAGTCTCGTCCTGCTCCTCCAGGTTGGACAGGTCCTTCATCATGCAGCCCTTGCGATAGGAAGCCGAGAGCTTGTTGGATCCGTCGGTGAGGAGGTTCAGGCGGCGGGCGATGAAGACGCCGGGCAGAGGCAGCATGGCGACCACAACCAGCGAGAAACACATCACTGTAGCCCAGGGTGGATAACTCTGAAAACGCTCCTCAGCCTACGGTCAGAGAGAACTGTGGTCAGATAccagaatctaaaatctaatcTAGAACCttcttccaccttaaacagaGCAGCAGTGTCTCACCTGGTCCTGAACCCAGGCGTTGTATCCAGGTGGGCTGATGGCCATCTGTATAATAGTAGCCAAGACGAGGACGAGGAGGCAGAGTGGAGAGACGTACTTCCACATGTAGAAATAAAACTTGTACGGCCTGAAGCCCAACATGTCCTCCAGGTCCTGCATGaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257707 True 3661 lncRNA 0.46 3 15810545 15815166

Neighbor

gene id symbol gene type direction distance location
LOC107196954 NA coding upstream 519 15802619 ~ 15810026 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding upstream 10609 15785446 ~ 15799936 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding upstream 121824 15528310 ~ 15688721 (+)
utp3 NA coding upstream 293105 15506398 ~ 15517440 (+)
LOC103025870 NA coding upstream 459579 15328235 ~ 15350966 (+)
LOC103030596 LOC108415872 coding downstream 23291 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 377977 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 491686 16306852 ~ 16403416 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding downstream 789686 16604852 ~ 16610376 (+)
LOC103037415 alpl,LOC107691326,LOC107685635,LOC107749423 coding downstream 1213082 17028248 ~ 17054064 (+)
G190104 NA non-coding upstream 44277 15765153 ~ 15766268 (+)
G190091 NA non-coding upstream 88251 15669675 ~ 15722294 (+)
G190089 NA non-coding upstream 175886 15633890 ~ 15634659 (+)
G190085 NA non-coding upstream 206642 15598152 ~ 15603903 (+)
G190086 NA non-coding upstream 232574 15577082 ~ 15577971 (+)
G190125 NA non-coding downstream 31360 15846526 ~ 15847008 (+)
G190133 NA non-coding downstream 49174 15864340 ~ 15866179 (+)
G190137 NA non-coding downstream 93869 15909035 ~ 15909622 (+)
G190142 NA non-coding downstream 203139 16018305 ~ 16044503 (+)
G190147 NA non-coding downstream 348176 16163342 ~ 16191135 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 30709 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 53364 15710930 ~ 15757181 (+)
G190050 NA other upstream 445545 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 966269 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1638924 14114204 ~ 14171621 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1015743 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1304779 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1365956 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 1619196 17434362 ~ 17446741 (+)
G190550 NA other downstream 1668654 17483820 ~ 17493182 (+)

Expression


Co-expression Network