G190089


Basic Information

Item Value
gene id G190089
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15633890 ~ 15634659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257665
CACAGGACCTCGTAGACCATAGTATATCACAGGACATCGTAGACCATAGTATATCACAGGACATCGTAGACCATAGTATATCACAGGACATCGTAGACCATAGTATATCACAGGACATCATAGCCCACAGTATATCACAGGAAATTGTAGCCCACAGGACATCATAGCCCACAGTATATCACAGGACATCGTAGCCCACAGTACATCACAGGAAATTGTAGCCCACAGTATATCACAGGACCTCTTTGTCCTGCTCTGTGTTGGTTTTTCTGTCCTGTGGGTCCTGAGTATTGAGGAACGGGGTGAAAtgaggagaataataaagtaaacaggGAAACAGAAGCACAGCTACAGTCTGTAACTATAGTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257665 True 371 lncRNA 0.44 2 15633890 15634659

Neighbor

gene id symbol gene type direction distance location
utp3 NA coding upstream 116450 15506398 ~ 15517440 (+)
LOC103025870 NA coding upstream 282924 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 562686 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 620010 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 724944 14899354 ~ 14908946 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 150787 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 167960 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 203798 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 558484 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 672193 16306852 ~ 16403416 (+)
G190085 NA non-coding upstream 29987 15598152 ~ 15603903 (+)
G190086 NA non-coding upstream 55919 15577082 ~ 15577971 (+)
G190043 ppcs non-coding upstream 113824 15490071 ~ 15520066 (+)
G190068 NA non-coding upstream 162354 15446216 ~ 15471536 (+)
G190067 NA non-coding upstream 188125 15445120 ~ 15445765 (+)
G190091 NA non-coding downstream 35016 15669675 ~ 15722294 (+)
G190104 NA non-coding downstream 130494 15765153 ~ 15766268 (+)
G190116 NA non-coding downstream 175886 15810545 ~ 15815166 (+)
G190125 NA non-coding downstream 211867 15846526 ~ 15847008 (+)
G190133 NA non-coding downstream 229681 15864340 ~ 15866179 (+)
G190050 NA other upstream 268890 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 789614 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1462269 14114204 ~ 14171621 (+)
G189621 NA other upstream 1525782 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1589163 13973779 ~ 14044727 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 76271 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 143146 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1196250 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1485286 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1546463 17181122 ~ 17185128 (+)

Expression


Co-expression Network