LOC103025870


Basic Information

Item Value
gene id LOC103025870
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15328235 ~ 15350966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239907.3
CACGCGCAGCCGGGACACAAGCCTCGACATCATTTCTCTGGTGTTCAGacagagagcagcagcagcagcagcaggacggGGATTCCGCAGCGGCTCCAGGAGGCTGTGAGGTGAGGATATAGCGGTGCTTTTTACAAGAAGATGAAGATCTGGACCGAGAAAAGAAGACTTGAGATATTTTAAGAAGTGAAACTGAACATCGCCCCGCTCTGAAACGGCTCGTCAGTAAAACTACAGAAACTGGTGTTCTGTTGTTCTGTGGCTCCAAGAAGAAGCTGAAGAGAAAATCAGGACCTGTAAAGACACTCTGAAAAGAACATTCATGTGATTTTGTGCCTTTTTGTACCTCAGTTTTTggattttaacagattttaacttttttttttttaaatatttatatatatttttgttctgGAACTAGAAGGGAAACTGAGGGAAACTGGAACGACTGGTTAAAAACGAGCCACCAGCAGATCCATCATGTCCTAAAGCTGAAGTGTCCTCAGTGTAAAAGCCGTGACGGGGACAGGGGACGTAGTGGGGACGTGGACGTAGTGGGGACGTGTCTCCATCATGCTGCTGAAGAGGAAGCTCTGCATCGCCGCCTCGTTTTGTGGCGTTGTGTTCTTCATGTTTGCGACGCACACCATTCAGAAAAACAGTGTTCTAAACGTTCAGATGGAGGCTCCGCCCACCACGCCCCGCCCCCAGCTAAAGAACCACACCCGGGTCCAGACCCCGCCGGTCCGGCGCCGTACCTGCAGCTGCTCCACCTGTATATCAGATCCAGGCGAGTCTGATTGGTTCGACCGGCGATACGACTCCTCCCAGCATCCCTACCTAACCAATCAGGACCAACCTATAGACCCAACTGCATTAAAGTGGTGGCTGgCTCTGCAGAGGTCAGTGGACGGGACGATGGAGGAGGTGATGAGGAAGATGTTCTCGGTGATTTCTCCTCCTCCGGGGGAGGAGCTGAATCCGGCCGGTCGCTGTCGGACCTGCGCTGTAGTCGGAAACTCAGGAAATCTGCGGGACTCTAAATACGGAGAGCTGATAGACGCCCATTCCATCGTCTTTCGGATGAATAAAGCGACGACGGTGGGGTTCGAGCGAGACGTGGGGAATAAAACCACTCATCACTTCATGTACCCTGAGAGCGCCGTGGACCTGCAGCCCGGCGTCCACCTCGTCCTGCTGCCCTTCAAACTGCGGGACCTGCAGTGGGTCACCAGCGCTCTGTCCACCGGAGAGATTAAAACGACGTATACCCGAGTGAAGGAACGAGTTCAAGCTGAGAAAGACAAGATAATTGTGGTGAATCCAGGTTTTTTTAAGTACACTCACGATCACTGGACCGAGCACCACGGGAGATACCCGTCCACCGGGATGCTTGCGATAGTGTTCGCTCTTCATCTCTGTGACGAGGTCTCTGTGTTTGGTTACGGTGCAGATTTACAGGGTAATTGGCATCATTACTGGGAGGAGAACAGGTACGCCGGAGCGTTCAGGAAGACCGGGGTTCACGACGCCGACTTCGAGAGTAAAATCATCCAAACCTTAAACTCAGAGAGAAAAATCAAACTTTACCCCCAAACAGAGAAACTCTCCGATCCTGAACTGAGAGAAAGGAATGAATGAACGCAGTGAGGCATGCtgggacgagagagagagagagagagagagaggccaaaGAGGAGAGACACACCTGTGATCACCTGATATTACCTGACCACTGTGAGCCACGCTGAACCAAACCCCGCCCCCTTTCCTAAAGACCAAACACACCTGAgtgctgtttctttttattcagCAAACGTTTCACAGCGAATCAGATCAATGAACGGATTCATGTGACGAGAAGAAGCTCCTCCCACAGGAGATACAGGAAATACACCTGATCCAGAGCGCACCTGATCCGGAGCGCACCTGAt

Function

GO:

id name namespace
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG:

id description
K00786 GALT29A; beta-1,6-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239907.3 True 1934 mRNA 0.51 7 15328235 15350966

Neighbor

gene id symbol gene type direction distance location
slc2a10 NA coding upstream 257031 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 314355 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 419289 14899354 ~ 14908946 (+)
LOC103047572 LOC108424606 coding upstream 439468 14859484 ~ 14888767 (+)
LOC103039390 cnpy2,LOC103039390,LOC108431501,LOC107572063 coding upstream 545165 14779767 ~ 14783070 (+)
utp3 NA coding downstream 155432 15506398 ~ 15517440 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding downstream 177344 15528310 ~ 15688721 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 434480 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 451653 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 487491 15838457 ~ 15844270 (+)
G190037 dynlrb1,LOC106565026 non-coding upstream 6001 15318697 ~ 15322234 (+)
G190034 NA non-coding upstream 14239 15313795 ~ 15313996 (+)
G190030 NA non-coding upstream 19840 15307943 ~ 15308395 (+)
G190024 NA non-coding upstream 29875 15296683 ~ 15298360 (+)
G189991 NA non-coding upstream 43522 15209618 ~ 15284713 (+)
G190041 NA non-coding downstream 2019 15352985 ~ 15356830 (+)
G190052 NA non-coding downstream 16840 15367806 ~ 15368557 (+)
G190063 NA non-coding downstream 69329 15420295 ~ 15423282 (+)
G190067 NA non-coding downstream 94154 15445120 ~ 15445765 (+)
G190068 NA non-coding downstream 95250 15446216 ~ 15471536 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 483959 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1156614 14114204 ~ 14171621 (+)
G189621 NA other upstream 1220127 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1283508 13973779 ~ 14044727 (+)
LOC103033837 pmel other upstream 1901170 13415069 ~ 13427065 (+)
G190050 NA other downstream 11726 15362692 ~ 15365000 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 359964 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 426839 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1479943 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1768979 17119945 ~ 17123674 (+)

Expression


Co-expression Network