G190041


Basic Information

Item Value
gene id G190041
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15352985 ~ 15356830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257612
aattatttaagataaaaaatgaaggtcagtcaatctgaaagtcagtttaagaactttgaaagtgtcctcaagtgcagtcgcaaaaaaagaccatcaaaaacattataatgatggaactggcactaatcaggactGCCCTTAGAAACCACATGATAAAAGCATCTAAATTcttcagagtattttggtttgtttaacactgtttttaagttactacatgattcattatgtgttccttcataatctgatagatcactacactattcatttactatgtagaaaaatgttattttatttgtattattattttagcctTATGTGTTATTAAAGCatgcattaaaacataaaaaatggttattaaaaataaataaaaataggacCTAAAACCACTTATTTTAATAACACATCATGGCTcacgtttttgtttttaaagataaaaCGGAAACATTTTCACTTTCAACAGTAggtttttggacattttatcttaaatcttaaattttttgttttatattttatagtgcatttgagtaatattctcttaggaaaatgtttattatgttCTCAGTCGTTTTGCTGTTAAGATTTAGTTTAAAGgtctatccggacgggattattttcacacttctactctacagtgataaaactcctgcatccggactgtaattaaaaaacaggaggatcagtgagtttatAGGGTTtagtttttctcggtcacatgacatcatcacagagttcagtagctcctccatttccactcactgttgtgtttttaacgtggatctccgtggaaaccgtggcgtgcccaaagtgtaattacggtgcgcggcagtggaaaatatctattttattaaaggcgaggaaacgaaactcagagatgtgcgtccggacgggactaaaattaccggaggagcacggagttcagagaaaaacagtagataattcagcctgtaatttactcagaggacgtctgagaaaaacacctacatgatcgttctggacgagaataaaatcacagagaaaattacccagaaccccctgagaaactaatctaatctaatcccgtccggattgGGTTTAGGATCATCCAGCCgtccatataaataaataatctgtgcCTTGGCGTGGTTGCACTGATCACACATCTCACTTTACCTTCTTTTGCCAGTTTTTGTGACGATATGTagaattttctaaatttttgattttcgttattttttattttattcacatcgactgaaaaaagaaacacttttgACTGAACCTGTGTTTAAGTATTGGGACGTATTTTTGATTGTTAatttttggtttgatgactgACTGACAGTTTTGGTGAAATTAGTTTTTCTATTGTAGCCTGGAATCGTTtaactgttacaccactgtgAAAAAACTGAAACTTGACTTCATTTTTGTTGCATTTGTTTCTTATTTGATtcttattgtgtttttaatgaatgtattcTGATTCTCTGCCTCAGAAAGCCTTGCTCTGTGTCCgtcagtgttttataaaatattaatattgtggTTTGCTGGGACTCGAGGACATGCCTTAAGTGTTTTACATGAACTTCCTTCATCAAAAATCACCATAAAATCTTACAATCATACAATTAAGACcaagaaagagacaaaagattagttttttttattgacttttaataaatgtttcaacAAACTCAAAAAAATGAGTGATGAAAAATTAGTGCGAGGACGTGAACatgataataaacataataaacttCAATTCAAAAACTAGAACTgataataattcatatttatatattaaactataaaaacGTCACATTTAAAAATCCTGATCAgatgtcaaaatattttaagtgaaaaataaaaataaaacaagagaaCTCAAATAAACGCAAGAAAATGCGAGAAAATGCACAAGTGCAAAATTTGAGTTATATAAGAGCTAAATgcttaattcttattttttttttttcatttgttccaGTGAATTTCTTCTTGAAATTTCATTCCAATTCTacttaaatcacatttaaaaaaaataaaattaaaaacatgccaAGAGAAACAATATGAATACAACATACAGATTTTAAAAGCATGAGTCACAGGAAACCCCAGCCCATAACTCCGCCCCTTTCTAGTTAAATGTACTTGTTTGTGCAAGTTggtagaaaaataaagaaatacagtaaATCGCTGGTTAATTTGGgggttttacagtatttacagcagtgTGGGATATAGATGCATTTCAAGTATTATATTCCGAGttttgtaatgattaataaactgAACTTCACACAGTAAAGCTGCgtttcattttaactcatttcaATATGGGAAtgtagtttagttcagtttggaTGATAAAGTTTctccaaaatgaaaaaaatagttttttaaattatctattattttattgGCATTTTAAGAAAAGTCATATTGTGGCAGTGatgtaatatagtaatatagcaAGAaactagcataataatgcaattatattCTCCTAAAAAGCTAAATTctgaaactaaataaataaaaccataaatacaatttaaaaaatacatttttaagaacaaCTGTCGGATtcacattatataaaaatgattatttccACAGTAGTAAGTGTTattatactgtttattgttACTTCTGTTCTCTATTAGTGTCACGTTAAATCAGAATGTTCAATAAGTCAGGTTTTATGTATatccttaaaatattttaatttagtttttaaacgTTCTGGTAATGTCACTTCTTgggtcaatgttttaatttttagtttttacaatttcacttttaacatttctataATGTTAGTTTTCATCTAGCTGGGAACGTTATGTAAGGAAAATTGTACTTGGATTTGGGATTATGTCACATATTCAGAATGTTCCTAAACGTTATTATAACGTTCTCTGCTGAGATGTTTCCACGCTGTTTGGATGTGCATAGTAATGGTTTGTATCACAAcgtaattaaaatgtttctcacataacattCCCAGATAAACGAaaactaacattttaaaaatgttaaaagtaacattctaaaaactaaaaacattgacacaagAAGGGAcattaccagaacatttaaaaactaaattaaaacattttaagaatgtaCAGAAAAGTACATGATTGAACTGATTTGAATGTTCTAAGAGCGTTAACTTAACGTTTAGAAAACATTCCACTAACCTGAAATTGTTATCTGGGACTTTCACAGATCGTggttaaacattattaaacagttttaacaTTAATAGAGAATAGAAgtgataataaactgtataataatacaacatttttatataatgttaatttaatagtttggtagtaaaaatgcattaataaattgtaaaaatatgtGTACTCAAACCATGTTATGAttatgctaacctgggacaatgctaactATGCTAACGTTGAGATGTACTGTATAATTGGAATGCAGTGAGCTCTGGGGTAAAGTAATTCCCAACGTCCAACATTCGACATCAGAGCTAAATTTAACGCAGCTTTATTGTGTTTAGACCTGGACGGGCCCGGGTCCCCactaagcattttttttccaggtctGGTCCTCACAGTGCACTTTAATGAGAAAAGCAGATTTTACACACATGCTCAGATAATCTAAACCTGAATGTGAGAATGTCCCCGTATTGTATCAGACGATGGATGAAGTACCAAATCACGTGCGAGCACCTTTGTAAACAACTTTGTgccatttttgcctttttttatttgacatttttgaaATGGCAAAGCTGTGGTCTGTCTTGAAAAAAGCCTTGTGTTTACATAATCACTAGAAATCATCAGTatg

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU257612 True 3822 lncRNA 0.31 2 15352985 15356830

Neighbor

gene id symbol gene type direction distance location
LOC103025870 NA coding upstream 2019 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 281781 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 339105 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 444039 14899354 ~ 14908946 (+)
LOC103047572 LOC108424606 coding upstream 464218 14859484 ~ 14888767 (+)
utp3 NA coding downstream 149568 15506398 ~ 15517440 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding downstream 171480 15528310 ~ 15688721 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 428616 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 445789 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 481627 15838457 ~ 15844270 (+)
G190037 dynlrb1,LOC106565026 non-coding upstream 30751 15318697 ~ 15322234 (+)
G190034 NA non-coding upstream 38989 15313795 ~ 15313996 (+)
G190030 NA non-coding upstream 44590 15307943 ~ 15308395 (+)
G190024 NA non-coding upstream 54625 15296683 ~ 15298360 (+)
G189991 NA non-coding upstream 68272 15209618 ~ 15284713 (+)
G190052 NA non-coding downstream 10976 15367806 ~ 15368557 (+)
G190063 NA non-coding downstream 63465 15420295 ~ 15423282 (+)
G190067 NA non-coding downstream 88290 15445120 ~ 15445765 (+)
G190068 NA non-coding downstream 89386 15446216 ~ 15471536 (+)
G190043 ppcs non-coding downstream 133241 15490071 ~ 15520066 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 508709 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1181364 14114204 ~ 14171621 (+)
G189621 NA other upstream 1244877 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1308258 13973779 ~ 14044727 (+)
LOC103033837 pmel other upstream 1925920 13415069 ~ 13427065 (+)
G190050 NA other downstream 5862 15362692 ~ 15365000 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 354100 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 420975 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1474079 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1763115 17119945 ~ 17123674 (+)

Expression


Co-expression Network