G190063


Basic Information

Item Value
gene id G190063
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15420295 ~ 15423282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257636
TCACTTGTCGTAGTACAGAGCGAGTCCACACCCGGCCCGATGGCGGCTGTAGAACCGGTTCTCCAGATCGATACGAGTTTCTCCAATCATATCGTCTGATCCCACCAGATCATGATCAAATATGATGATGTTCAGTTCCGTCTCCAGAGGAAACGATACGGTCAACTCAAACACCCTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACACTCAAACACCCTTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACAACTCAAACACCCTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACAACTCACTTAAACACCCTGCAGAAAACACCACAACTCAAACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257636 True 452 lncRNA 0.47 2 15420295 15423282

Neighbor

gene id symbol gene type direction distance location
LOC103025870 NA coding upstream 69329 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 349091 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 406415 14988757 ~ 15013880 (+)
LOC103040841 LOC108424607 coding upstream 511349 14899354 ~ 14908946 (+)
LOC103047572 LOC108424606 coding upstream 531528 14859484 ~ 14888767 (+)
utp3 NA coding downstream 83116 15506398 ~ 15517440 (+)
foxj3 foxj3,LOC107551120,LOC107749445 coding downstream 105028 15528310 ~ 15688721 (+)
LOC103032686 pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954 coding downstream 362164 15785446 ~ 15799936 (+)
LOC107196954 NA coding downstream 379337 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 415175 15838457 ~ 15844270 (+)
G190052 NA non-coding upstream 51738 15367806 ~ 15368557 (+)
G190041 NA non-coding upstream 63465 15352985 ~ 15356830 (+)
G190037 dynlrb1,LOC106565026 non-coding upstream 98061 15318697 ~ 15322234 (+)
G190034 NA non-coding upstream 106299 15313795 ~ 15313996 (+)
G190030 NA non-coding upstream 111900 15307943 ~ 15308395 (+)
G190067 NA non-coding downstream 21838 15445120 ~ 15445765 (+)
G190068 NA non-coding downstream 22934 15446216 ~ 15471536 (+)
G190043 ppcs non-coding downstream 66789 15490071 ~ 15520066 (+)
G190086 NA non-coding downstream 153800 15577082 ~ 15577971 (+)
G190085 NA non-coding downstream 174870 15598152 ~ 15603903 (+)
G190050 NA other upstream 55295 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 576019 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1248674 14114204 ~ 14171621 (+)
G189621 NA other upstream 1312187 14107302 ~ 14108108 (+)
slc6a11 slc6a11,LOC107750026,LOC107697565,LOC107561801 other upstream 1375568 13973779 ~ 14044727 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other downstream 287648 15710930 ~ 15757181 (+)
G190109 acad9,LOC107551129,LOC107749438 other downstream 354523 15777805 ~ 15779836 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1407627 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1696663 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1757840 17181122 ~ 17185128 (+)

Expression


Co-expression Network