LOC103032686 (pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954)


Basic Information

Item Value
gene id LOC103032686
gene name pcbp2,LOC108440343,LOC106582661,LOC106956729,LOC103464415,LOC105030566,LOC106571954
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15785446 ~ 15799936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682457.1
TGCTGTTTGTTGTCTTTGTGTGGGACTGGAGCTTCAGCGCACTCTCGGTTCTCCCTGCTCCCCGAGTCCTCTCTAAATCCCCCCCTTCATCCATTACCCTCCTCCCGCTCCTTCCCCTCTACCCTCCGCTCCCCTTTACCCTCTACCCTCCCCCGGCCCGCCGACAGGTCCAGCTTTGTGACCAAAGACTCCCTTTTCCTACCACATTCAGCTCATTAACTCTATATAAGCCATCATAATGGACTCTGGTGTGATTGAAGGAGGACTCAACGTCACGCTGACCATCAGACTACTCATGCACAGCAAGGAAGTTGGAAGCATAATCGGCAAGAAAGGTGAATCtgtgaagaaaatgagagaagagAGTGGTGCACGGATCAACATCTCCGAGGGCAACTGTCCAGAGAGAATCATCACTCTAGCAGGACCGACCACTGCCATCTTTAAAGCCTTCTCCATGATCATCGACAAACTCGAGGAGGACATCAGCAGCTCCATATCTAACAGCCCGGGCTCCAGCAAACCCCCCGTCACCCTGCGCATCGTCGTGCCGGCCAGCCAGTGCGGATCCCTCATTGGGAAAGGGGGCTGCAAGATTAAAGAAATCAGAGAGTTAACCGGTGCACAAGTGCAGGTTGCTGGAGACATGCTGCCCAACTCCACAGAGCGAGCCATAACCATCGCCGGAACCATACAGTCCATCATTGAGTGCGTCAAGCAGATCTGTGTAGTGATGCTGGAGTCTCCTCCAAAAGGTGTGACCATTCCATACAGACCCAAACCGTCGGGCTCGCCTGTGATCTTCGCTGGAGGACAGGCATATGCCGTTCAAGGACAGCATGCAATCCCCCAGCCGGATCTCACCAAACTTCACCAGCTAGCAATGCAGCAGAGTCCCTTCCAGCAGATTCCCAGCAACCAGGGTTTTACTACCACAATGGATGCTGCTGCACAAACTTCCCATGAGATGACCATTCCAAATGATTTAATCGGATGCATCATTGGCCGCCAAGGAGCGAAAATCAACGAGATCAGGCAGATGTCCGGAGCTCAGATTAAGATCGCCAATCCTGTGGAGGGATCCTCTGACCGGCAGGTCACCATAACTGGATCGGCTGCCAGCATCAGCCTAGCGGAGTACCTCATCAACGCCAGGCTCTCCTCTGAGGCTACAGGACTGGCGAGTAACTGAAAGCGCAGGACGTGGATCTGCCTCAGCACCACGTTCTCCATCAGCACCTCAGAACTCCAGAGCTCTGTGTTTCCTTCAACACTAGCCATAATCCTCTGCCTTTACTCTTTATTTCTCCTGTATgaaccttttttaaattatgtttggTTACAGCTTTTAGTTTGGATGTTTCTTTCTCATCTGTCTCGGCAGAAGAGTTGGGATGGAAAATCTGAGTAGGTATAGGTTTAGTTTTGTAATTTAATGgtgatgtttttctttattacgATCAAATGaaatacagaaaagaaaaataaacagattacaAAAATA
>XM_022682458.1
TGTGCTGTTTGTTGTCTTTGTGTGGGACTGGAGCTTCAGCGCACTCTCGGTTCTCCCTGCTCCCCGAGTCCTCTCTAAATCCCCCCCTTCATCCATTACCCTCCTCCCGCTCCTTCCCCTCTACCCTCCGCTCCCCTTTACCCTCTACCCTCCCCCGGCCCGCCGACAGGTCCAGCTTTGTGACCAAAGACTCCCTTTTCCTACCACATTCAGCTCATTAACTCTATATAAGCCATCATAATGGACTCTGGTGTGATTGAAGGAGGACTCAACGTCACGCTGACCATCAGACTACTCATGCACAGCAAGGAAGTTGGAAGCATAATCGGCAAGAAAGGTGAATCtgtgaagaaaatgagagaagagAGTGGTGCACGGATCAACATCTCCGAGGGCAACTGTCCAGAGAGAATCATCACTCTAGCAGGACCGACCACTGCCATCTTTAAAGCCTTCTCCATGATCATCGACAAACTCGAGGAGGACATCAGCAGCTCCATATCTAACAGCCCGGGCTCCAGCAAACCCCCCGTCACCCTGCGCATCGTCGTGCCGGCCAGCCAGTGCGGATCCCTCATTGGGAAAGGGGGCTGCAAGATTAAAGAAATCAGAGAGTTAACCGGTGCACAAGTGCAGGTTGCTGGAGACATGCTGCCCAACTCCACAGAGCGAGCCATAACCATCGCCGGAACCATACAGTCCATCATTGAGTGCGTCAAGCAGATCTGTGTAGTGATGCTGGAGTCTCCTCCAAAAGGTGTGACCATTCCATACAGACCCAAACCGTCGGGCTCGCCTGTGATCTTCGCTGGAGGACAGGCATATGCCGTTCAAGGACAGCATGCAATCCCCCAGCCGGATCTCACCAAACTTCACCAGCTAGCAATGCAGCAGAGTCCCTTCCAGCAGATTCCCAGCAACCAGGGTTTTACTACCACAATGGATGCTGCTGCACAAACTTCCCATGAGATGACCATTCCAAATGATTTAATCGGATGCATCATTGGCCGCCAAGGAGCGAAAATCAACGAGATCAGGCAGATGTCCGGAGCTCAGATTAAGATCGCCAATCCTGTGGAGGGATCCTCTGACCGGCAGGTCACCATAACTGGATCGGCTGCCAGCATCAGCCTAGCGGAGTACCTCATCAACGCCAGcatcccgtcctctaaaccctcctcctcctcctcttcctccttctaCCTGAACCCTGAACAGACCCTCAGCTCCAGCCTGTACCCTCCCATCTCTACTGCTACTGCTCCTGctacctccacctcctcctctgtatccccctcttcctcctcctcctcctcctcctcctgtgtGGTGACTCCTCCTCCCGTCTCTGCCATTTCTCTGTCCTCCCTTTTGGTATCGAGTCCTGGTccttcctccacctcctctcctcctgcgtctctctcctcctccacctcctcctcagccTCTGTCTCCAGTGTGCTCAGCATCAAGCCCCTGCCCCTCCTGTCTCTCCATGTCGTTAACGGCCTTTCTCACGAGCCTAAACTCAGTCCTGATCTCGGCTCCAAGCCCAAGAAGCGCAGGCTCTCGCCGTATTAGGAGAACATTGCTCCTGATTTCTCCTGGactgatatatatttatctgtacatttcatttaaaggccCTTTCACACCAAGTACGAGTTTTATAGGGTGAATAAAccccccctgattttagctga

Function

symbol description
pcbp2 Enables mRNA 3'-UTR binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in intestine; nervous system; otic vesicle; somite; and tail bud. Orthologous to several human genes including PCBP2 (poly(rC) binding protein 2).

NR:

description
PREDICTED: poly(rC)-binding protein 2-like isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K21444 PCBP3_4; poly(rC)-binding protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682457.1 False 1504 mRNA 0.50 13 15785448 15799936
XM_022682458.1 True 1703 mRNA 0.54 13 15785446 15796142

Neighbor

gene id symbol gene type direction distance location
foxj3 foxj3,LOC107551120,LOC107749445 coding upstream 96725 15528310 ~ 15688721 (+)
utp3 NA coding upstream 268006 15506398 ~ 15517440 (+)
LOC103025870 NA coding upstream 434480 15328235 ~ 15350966 (+)
slc2a10 NA coding upstream 714242 15062746 ~ 15071204 (+)
LOC103041453 LOC108424609 coding upstream 771566 14988757 ~ 15013880 (+)
LOC107196954 NA coding downstream 2683 15802619 ~ 15810026 (+)
LOC103030596 LOC108415872 coding downstream 38521 15838457 ~ 15844270 (+)
hdac11 hdac11,LOC107727860,LOC107749433 coding downstream 393207 16193143 ~ 16236336 (+)
fbln2 fbln2 coding downstream 506916 16306852 ~ 16403416 (+)
LOC103035562 barx1,LOC106583841,LOC107576198,LOC107709546 coding downstream 804916 16604852 ~ 16610376 (+)
G190104 NA non-coding upstream 19178 15765153 ~ 15766268 (+)
G190091 NA non-coding upstream 63152 15669675 ~ 15722294 (+)
G190089 NA non-coding upstream 150787 15633890 ~ 15634659 (+)
G190085 NA non-coding upstream 181543 15598152 ~ 15603903 (+)
G190086 NA non-coding upstream 207475 15577082 ~ 15577971 (+)
G190116 NA non-coding downstream 10609 15810545 ~ 15815166 (+)
G190125 NA non-coding downstream 46590 15846526 ~ 15847008 (+)
G190133 NA non-coding downstream 64404 15864340 ~ 15866179 (+)
G190137 NA non-coding downstream 109099 15909035 ~ 15909622 (+)
G190142 NA non-coding downstream 218369 16018305 ~ 16044503 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 5610 15777805 ~ 15779836 (+)
map1lc3a map1lc3a,LOC107551126,LOC107685654 other upstream 28265 15710930 ~ 15757181 (+)
G190050 NA other upstream 420446 15362692 ~ 15365000 (+)
LOC103040222 ankrd52,LOC105017093,LOC106583345,LOC106565408 other upstream 941170 14797668 ~ 14844276 (+)
slc6a1 slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 other upstream 1613825 14114204 ~ 14171621 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other downstream 1030973 16830909 ~ 16877838 (+)
G190481 strip1,LOC106583081 other downstream 1320009 17119945 ~ 17123674 (+)
G190484 irf6,LOC106565674 other downstream 1381186 17181122 ~ 17185128 (+)
cept1 cept1,LOC103025726,LOC108413012 other downstream 1634426 17434362 ~ 17446741 (+)
G190550 NA other downstream 1683884 17483820 ~ 17493182 (+)

Expression


Co-expression Network