G190550


Basic Information

Item Value
gene id G190550
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 17483820 ~ 17493182 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258365
ctTGCAAAGTACGTCAAAAGTCTTAAaagatgatggaactggcactcatcaggtaTGTGTGCGTGTTACCTGTGGTACTCTGTGAGGGGGGCCCAGTTGACCCCCTCAGGGAAGCAGAAGAGTGTGATGGCTTTCAggctcttctcctcctcctctttctggGATCTGCTGGTGGCTGTGGGGAACTGGTAGGTGATATGCGGCTCGTAACCTTCATCCTTCCTCCTCTTCAGACTCACCACCACCAGCCGCTCGAAGAAGAACGACTGCACAGGTTTGTGTGTACTGTCCGGGTGTGGTGGAGCTTTAGGTGGAGGTGCTGACTGGGGGGGTATTACTTTCTTCTCTcTGTCTTTCTGGAGTTTCTCCTGCAGGGAGGAGAACATTGAGCTGATCTTCTTCATCGGCCCGAGATCGACTTCAGTCTGACCAGACATTTCTCACAACAcTTTATCTGCTATTTTTCTCCAGATCAGAATCAGCCTCCCTCTGAGCTCCTCCACTACATACTAACCCCCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258365 True 521 TUCP 0.51 3 17483820 17493182

Neighbor

gene id symbol gene type direction distance location
dram2 LOC108413005 coding upstream 18733 17458210 ~ 17465087 (+)
LOC103036105 cacna1sa,LOC107667627 coding upstream 71749 17369537 ~ 17412071 (+)
LOC103036408 LOC103036408 coding upstream 117091 17362425 ~ 17366729 (+)
lamb3 NA coding upstream 217997 17241432 ~ 17265823 (+)
LOC103038691 NA coding upstream 260542 17216776 ~ 17223278 (+)
rbbp5 rbbp5,LOC106565113 coding downstream 44791 17537973 ~ 17549957 (+)
LOC103023632 LOC103023632,LOC108415135,LOC107671524,LOC107576648,LOC107698306,LOC107750684,LOC107575492 coding downstream 90970 17584152 ~ 17586613 (+)
LOC103033874 arl8a,LOC107722853,LOC107671521,LOC107569762,LOC107750681 coding downstream 135658 17628840 ~ 17640167 (+)
LOC103033562 LOC108412444 coding downstream 245305 17738487 ~ 17749318 (+)
srsf3 srsf3,srsf3b,LOC108413700,LOC107569752,LOC107690536 coding downstream 262762 17755944 ~ 17766863 (+)
G190555 NA non-coding upstream 10341 17468901 ~ 17473479 (+)
G190554 NA non-coding upstream 64564 17405044 ~ 17419256 (+)
G190558 NA non-coding upstream 65044 17414275 ~ 17418776 (+)
G190559 NA non-coding upstream 66884 17414782 ~ 17416936 (+)
G190556 NA non-coding upstream 69683 17413136 ~ 17414137 (+)
G190581 NA non-coding downstream 409 17493591 ~ 17506157 (+)
G190589 NA non-coding downstream 36287 17529469 ~ 17529876 (+)
G190570 NA non-coding downstream 47204 17540386 ~ 17553241 (+)
G190593 NA non-coding downstream 58736 17551918 ~ 17565901 (+)
G190603 NA non-coding downstream 124208 17617390 ~ 17618763 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 37079 17434362 ~ 17446741 (+)
G190484 irf6,LOC106565674 other upstream 298692 17181122 ~ 17185128 (+)
G190481 strip1,LOC106583081 other upstream 360146 17119945 ~ 17123674 (+)
LOC111195387 cstf1,LOC107555629,LOC107749426,LOC107685639 other upstream 605982 16830909 ~ 16877838 (+)
G190109 acad9,LOC107551129,LOC107749438 other upstream 1703984 15777805 ~ 15779836 (+)
LOC103024479 LOC108413015 other downstream 15208 17508390 ~ 17513309 (+)
cdkn1a NA other downstream 195335 17688517 ~ 17797302 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other downstream 529070 18022252 ~ 18041509 (+)
tmem43 NA other downstream 977415 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 1059672 18552854 ~ 18672404 (+)

Expression


Co-expression Network