G190661 (capzb,LOC105897928,LOC106565651,LOC106583096)


Basic Information

Item Value
gene id G190661
gene name capzb,LOC105897928,LOC106565651,LOC106583096
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18022252 ~ 18041509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258513
TctcgtttttattagtttcattccttttttttcactccggtggagtgtgtgtgcacattgtgtgagcctgtgtgtgtgtgtgtgtgtgcacattgtgtatgtgtgtatgtgtgtgtgttaagtttaTACACTTTGCAGCCCCTCAGCCGTGTCACACGGTCAGAAACACGATTGGACAGATCTACACTTCGagcattttactgttttattgttgCTGGAGGCTCTAATAATACATGAACTGTAAGCtttacaaaaacaaaccaaaaaaaaacatgaagacaTAAAATAATCCAATAAACCATGAACCATAAACCACCCCCAAACATAAACAACAGAGTgctgagctgagagagagagagagattaaaaaagagagagagaaagaataaagagTAGATAGAGGTGGCTGTATGTGAAGTACTTCAGTAAATATATAACTGCTGTGTGTTATTTTACGCTCAGGTTCAGCCCCGTCTATCAGTATGAGtatcagtgtctctctctcaccctgcaGTAAAGTAAACGTTCAGAACCGGGGCTGAGAAAGCGCTGCGCTAACAATCGAGCTGAACGTCCGGCTCGGTTCGGGTCCGCTCTCTTTTAGGCCAAAGCGCAGACGACAGCCTAACCGTCAGAATCTCAATATCTTTATATTAATACTActcataaaaagagagagagagagaaaaatgtgttataaagagtgaaagagaaagatgtGAGATGCCTCAAAAATTGAGTGggagaaacaaacaaaccaacaaacaaaaaaataaaacaaaaacaaaacaaaaaaaatccaaagctGAGCATTTTCTCCTTTTTGCCGTTTGATTTCCGGATTTCAGACgggagcagacagacagactgagacagacagacagacagcgcaGCGGTGACCGAACTGACGACTAATTGCGACAAATTAAACATGaggtggacagagagagagaactagagagaaaaagagagagaaagtgtgataaagagtgagagatagagataaagagagaaataaagagagagagaagcgtgGGAGGAGGAGGGCGCCTCTAGCTCTGCTGTTTGCGTTTGTTGAGCGCTCCGACCAGGTCGTTCCGGAGAGCGTCCTGCTTGGATTTATCAGCCAGGGTCTGGACACTCCTTAGACCATTAACAATGTCCTTGGTCTTTCCAAAGTAGATCTCATTCAGGGTGGAGCGGATTTTGTTCTCCATGTCCTCCACCAGGCGGCCAATGTTGGCGATGTGTGGGGAAGACTCACTGACTGTCTCGTCTTTCTCcatCTGTCTGGTGAGGCTGCCGCCCAGGTTCATAGTTCCAGAGCCGGTTTTGGTCGTCTGCAGCCACAGCATCACAGTGGACGTGAGTTTGTAGTGAGCTGTACGACCGCTGGACTTTTCCTGCACTTCCACCACGTGGATGGAGTCCCAGCaccctttaatttttttggagCCGTCTCCGGCCTTCTTAATGAGGATGACTCCAGCAAAACCGTGATCCAAATCCCACAGGTAGACGGATGAAACTCCGCCCTCAAAATACAGGTCCCTGTACTGGTCGAAGGCATTGTTAGCCTCCACCTCCAGCTTCCTCAGACGAGCCGAGGGCATTGCACCATCATCGATGGGGGGCTCGTACTTATTACTCCATGGAGATCTGTAGGAGTCGCCATCTCGGTTGTAATCACAGAGCAGGTAGTCTTTTCCCACCACCTTATCCCGAGCGATCTTCAGAGGCTGATCCACAGAGGACAGCAAATCTTCACACAGGCTAGGCAccaggtCGATGAGGTCACTGAGATTCTTCTCGATCTGCTGCGGAGGCAGACGCCTCATCAGGTCCAGGGCACAGTCTAACTGTTGGTCGttCATCTTTGCGGCGCCTAAACTCGGTCTGGGAGAGGAGGAACACGCGGTACCGGCGGCTCGGCTTGCTGCTTTCCGCCTGCTGTCTCTGCCTCGCTGCTCGCGGTTCGGTCCGGTTCTGTCGTCGCCGCGTCTCCGCTGCTGCTGCCCAGCCCTGTCAGCGATTCTGCTTCCTCTactggagggggggggggctgaCAAAAACGGGACGCTGAGAAAACCCGTTACACATCCGG

Function

symbol description
capzb Predicted to enable actin filament binding activity. Acts upstream of or within muscle cell development and neural crest cell migration. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of F-actin capping protein complex. Is expressed in fin bud; head; pharyngeal arch; and somite. Used to study cleft palate. Orthologous to human CAPZB (capping actin protein of muscle Z-line subunit beta).

NR:

description
F-actin-capping protein subunit beta isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258513 True 2103 TUCP 0.49 10 18022252 18041509

Neighbor

gene id symbol gene type direction distance location
dstyk dstyk coding upstream 93595 17883060 ~ 17928657 (+)
ccnd3 NA coding upstream 167285 17848593 ~ 17854967 (+)
bysl bysl,LOC102787510 coding upstream 175875 17837190 ~ 17846377 (+)
LOC103033239 tmcc2,LOC107569750,LOC107690538,LOC107656904 coding upstream 220748 17797601 ~ 17801504 (+)
srsf3 srsf3,srsf3b,LOC108413700,LOC107569752,LOC107690536 coding upstream 255389 17755944 ~ 17766863 (+)
LOC103045175 NA coding downstream 1118 18042627 ~ 18054322 (+)
LOC111195431 NA coding downstream 10504 18052013 ~ 18052980 (+)
nbl1 nbl1,LOC108415674,LOC106583098 coding downstream 16001 18057510 ~ 18068394 (+)
tmem88b LOC108415445 coding downstream 38711 18080220 ~ 18092648 (+)
vwa1 NA coding downstream 83949 18125458 ~ 18141915 (+)
G190659 NA non-coding upstream 34575 17963685 ~ 17987677 (+)
G190636 med20,LOC102787816 non-coding upstream 185843 17831881 ~ 17836409 (+)
G190613 NA non-coding upstream 305419 17691046 ~ 17716833 (+)
G190600 NA non-coding upstream 320421 17664233 ~ 17701831 (+)
G190568 NA non-coding upstream 368266 17645844 ~ 17653986 (+)
G190667 NA non-coding downstream 1142 18042651 ~ 18055449 (+)
G190669 NA non-coding downstream 18476 18059985 ~ 18060748 (+)
G190693 NA non-coding downstream 113896 18155405 ~ 18172697 (+)
G190679 NA non-coding downstream 152059 18193568 ~ 18285804 (+)
G190694 atad3a,atad3 non-coding downstream 158508 18200017 ~ 18203726 (+)
cdkn1a NA other upstream 224950 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 508943 17508390 ~ 17513309 (+)
G190550 NA other upstream 529070 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 575511 17434362 ~ 17446741 (+)
G190484 irf6,LOC106565674 other upstream 837124 17181122 ~ 17185128 (+)
tmem43 NA other downstream 429088 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 511345 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 657088 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 1063980 19105489 ~ 19206958 (+)
G191211 NA other downstream 1327725 19369234 ~ 19374361 (+)

Expression


Co-expression Network