vwa1


Basic Information

Item Value
gene id vwa1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18125458 ~ 18141915 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682519.1
gaaagagagagagagaaagaggaagattAAACAGAGCATCGCTGGACTGGAGTTCACGCGCAAACTTTTTCGGTCCGGGGAAAGGGCACGCGCGCGCTCGCGTTCATGGATAGGTGAGAGCTCCTCGCGCCGTGCAGCTTTCCCCGCGCGAACCATGAGGAGGCTGGCGCTCGTGGGGCTGCTCACCCTGAGCGCGTGCCTGCAGCTCGCCTGCGCGCGCAGTGACGCACCTGGCACAGtgtttgaCTGTTGTGAGGGTGATCTGTTGATCCTGCTGGACTCCTCCGGAAGCATCTCCTTGTACGAGTTTTCCCGCCTGCTGCGTTTCCTATCCAacttgctccgcccctttctgCTGGGGCATGGCCAGGTGAGGGTGGGGCTTCTACAGGTGGGCACAGAGCCGCAGCTGGAATTCAATTTTGACACCTACAACTCCCAGGATGCACTGCAGGATGCGATATTAAGGACTCAGCAGCTCCGGGGCGATACTAACACTGAAGCTGCGCTGCTATTGGCCCAGAGAATACTAAACTGCCCACGAGGGGGCGACGCCCCACCCAGGGTTCTGCTGTGGCTGACCGATGGGGTGGAGCCAGGGAATGTGCACGAGCCAATGGCAGCAATTCGTCAGAATTGTGCTTCCGTGCTGGCAGTTTCTACTGGTCATGCTAATTACCAGGTTTTTCATGATGCCGTGACTCCGCCCATTGAGACGCATCTGCACTTTATAGACATCGATGACATCGAAATCATCACCGAAGATCTGAGGGAAGCGATTATCgATCTGATCCGGGCGGAGCGTCTGCAGGTGAGGGACATCAGTACCCACAGTGCCGTGCTGCAGTGGCGGCCGGTTCTGATTGGTGGATTTGGTTACTATGAGCTGCGTTACGGTTCCGGcgtggaggagaggaggatggcGCTGCCGGCTGATAAAAGCTGGACTGAGCTCACCGGCCTTCAGCCTGACACTCAATACACAGCCTggctcacaccacacacacctgcggggcacaaacacacactcagcaccaGCTTCAGGACTCTaccagaagTGTTGAGTCCAGTCTCAGTGAGCGTCTCGGAGTCCGGGGTGGACCGGGTGCGGGTCAGCTGGGCTCCCCTGCAGCCGGACAGTGTTCATCGCTATCTGGTGGAGTTCGGGTCGATTCCCAGCGGGGGGGTGAGAACAGTGACCCTGACGGGGCAAGTGAACAGCGCACTGCTGACCCAGTTAGAGCCTCACACAGAGTATCTGATCACAGTGACCGCAGTGCACTCCTCCGGCCAGCAGAGGGCCCTGTCTGTCAGAGCCTGCACTCAGGAAGTTCTGCCCGGCCTGGTGGACCTCCAGTTGACCCCTGTGGGGTCCGACTCAGTTAAGGTGGACTGGAGGGGTCACACTGAAGCGGCCGGACTGAGGGGGTACTGGGTGAGGTGGGAGACCAGACAACACTttccatcatcatcttcatcatcttccTCACGTTACCTTCCCGCACAGTCGCTTTCCACTGTTCTCACACACCTCAGCCCCAGCACTCGAGTGTGTGTGTCGCCGGTGTACCAGACGGCGCAGGGGGAGGGGCTGTGCTGCACTGCACACTCACAAACAGCTGCTGCTCCGTGGGGTTAGAGATGCTTCCggaaagaggaagaagaggaagaagaggaggagaggaagaagaggaagagaggaagagcgTCGCTGGAGAATCCGGAACCTTCTCACTCTTCTCAACTCTTCCTAAAGACTCTCACTATCAGCGCTCCACTCAACTTCATACAGACTTTAAATGTGCTGTGTTGGATTAAAGGAGTGCATCAGTGTTCGTCACTCTGATCTCAGATCTGCTGTATCTGTAGAGTACAGTCGATTATCACAGACCatcattttaacacaatttacTGAACTCAGAAATGAACAGAAACATACAGGACCCTGTTATATTAATCTATAGCTCAGCCGTCAAAACTGtccaccgtgcagcttgatttagggcgtgtgagtgtgtctttgctatcgtaacgacaggaaaagtacaccttgcatggttgcattccattgtttttattcattttaaaatatctagttGTGGTCTAGTTGGTCTCtcatatgaatgaatgccatgtgagctgttgtttgtgaaaaaaaaaatatcagatgtttctatttagccctgctttaga

Function

NR:

description
von Willebrand factor A domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682519.1 True 2193 mRNA 0.54 8 18125458 18141915

Neighbor

gene id symbol gene type direction distance location
tmem88b LOC108415445 coding upstream 32810 18080220 ~ 18092648 (+)
nbl1 nbl1,LOC108415674,LOC106583098 coding upstream 57064 18057510 ~ 18068394 (+)
LOC103045175 NA coding upstream 71136 18042627 ~ 18054322 (+)
LOC111195431 NA coding upstream 72478 18052013 ~ 18052980 (+)
dstyk dstyk coding upstream 196801 17883060 ~ 17928657 (+)
fndc10 fndc10 coding downstream 14114 18156029 ~ 18161046 (+)
ssu72 ssu72,ssu72l,LOC107690546 coding downstream 23221 18165136 ~ 18174898 (+)
tmem240 tmem240,LOC103042738 coding downstream 38511 18180426 ~ 18186858 (+)
sdhb sdhb,LOC103130297,LOC105927147,LOC107591143,LOC106929635,LOC107085616 coding downstream 76344 18218259 ~ 18229523 (+)
mfap2 mfap2 coding downstream 89313 18231228 ~ 18242944 (+)
G190662 NA non-coding upstream 53812 17974531 ~ 18071646 (+)
G190669 NA non-coding upstream 64710 18059985 ~ 18060748 (+)
G190667 NA non-coding upstream 70009 18042651 ~ 18055449 (+)
G190659 NA non-coding upstream 137781 17963685 ~ 17987677 (+)
G190636 med20,LOC102787816 non-coding upstream 289049 17831881 ~ 17836409 (+)
G190693 NA non-coding downstream 13490 18155405 ~ 18172697 (+)
G190679 NA non-coding downstream 51653 18193568 ~ 18285804 (+)
G190694 atad3a,atad3 non-coding downstream 58102 18200017 ~ 18203726 (+)
G190697 NA non-coding downstream 68132 18210047 ~ 18257812 (+)
G190721 NA non-coding downstream 161335 18303250 ~ 18307270 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other upstream 83949 18022252 ~ 18041509 (+)
cdkn1a NA other upstream 328156 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 612149 17508390 ~ 17513309 (+)
G190550 NA other upstream 632276 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 678717 17434362 ~ 17446741 (+)
tmem43 NA other downstream 328682 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 410939 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 556682 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 963574 19105489 ~ 19206958 (+)
G191211 NA other downstream 1227319 19369234 ~ 19374361 (+)

Expression


Co-expression Network