ssu72 (ssu72,ssu72l,LOC107690546)


Basic Information

Item Value
gene id ssu72
gene name ssu72,ssu72l,LOC107690546
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18165136 ~ 18174898 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682520.1
CcaattttaaacagaaaatgttaattACATCACATACTCAAGGAAAACTGTTCTAGATATTTATCGTGATAAACACATGGGTCAGCGCTTGCGCAGCAGCAGAAAAATTTGCACATATGGACGGGTAGCACAAATCGACGTGACACAGGCCCTGCGCGCAGGCGCAGTACTGGGACTGTGGAGGTGGCGTCACACCCGGTGGCTCCGCCCCGTCCGCTGCAATACGTCAGCGCCCCCTCGTCTCCCTCCGCCATTTTAGCTAGTTCTCTCTGTACAGCAGGTCCAGCTCAGTCTTTCTCTCCTAAAACCGCCGCGCTgatcttctcctctcctcatatttaactttaatattcTTCTTCTGAACTGTGAACTTTAACTCACAGCGATGCCGAGCCAGCCGCTGCGCGTGGCGGTCGTTTGCTCGAGCAACCAGAACCGCAGCATGGAGGCTCACAACATCCTCAGCAAACGTGGTTTTGACGTGCGGTCGTTCGGGACGGGCACTCACGTCAAGCTCCCCGGCCCGGCTCCGGACAAGCCCAACGTGTACGACTTCAAAACCACTTACGAACAGATGTACAGCGATCTGGTCCGAAAAGACAAGGACTTaTACACTCAGAACGGTATTCTGCACATGCTGGAGAGGAACAAGCGCATTAAGCAGAGGCCGGAGagattccagagctgtaaagaTCAGTTTGATCTGGTCATCACCTGCGAGGAGAGAGTGTACGACCAGGTGCTGGAAGATCTGAACTCTCGTGAGCAGGAAACGTTCCAGCCCGTGCACGTCATTAACGTGGACATTCAGGACAACCACGAGGAGGCCACACTCGGAGCTTTCCTCATCTGTGAGCTCTGCCAATGTattCAGCACACTGATGATATGGAGAATGAAATAGATGAACTGCTGCAGGAGTTTGAGGATAAAAGCAGCCGTCCGTTCCTCCATACGGTCTGCTTCTACTGACCTctgaataacacacacacacacacacaca

Function

symbol description
ssu72 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain; mRNA polyadenylation; and termination of RNA polymerase II transcription. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is expressed in central nervous system. Orthologous to human SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase).

NR:

description
Ssu72 RNA polymerase II CTD phosphatase-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682520.1 True 1001 mRNA 0.52 5 18165136 18174898

Neighbor

gene id symbol gene type direction distance location
fndc10 fndc10 coding upstream 4090 18156029 ~ 18161046 (+)
vwa1 NA coding upstream 23221 18125458 ~ 18141915 (+)
tmem88b LOC108415445 coding upstream 72488 18080220 ~ 18092648 (+)
nbl1 nbl1,LOC108415674,LOC106583098 coding upstream 96742 18057510 ~ 18068394 (+)
LOC103045175 NA coding upstream 110814 18042627 ~ 18054322 (+)
tmem240 tmem240,LOC103042738 coding downstream 5528 18180426 ~ 18186858 (+)
sdhb sdhb,LOC103130297,LOC105927147,LOC107591143,LOC106929635,LOC107085616 coding downstream 43361 18218259 ~ 18229523 (+)
mfap2 mfap2 coding downstream 56330 18231228 ~ 18242944 (+)
fbxo42 fbxo42 coding downstream 139581 18314479 ~ 18333043 (+)
LOC103030694 slc25a34 coding downstream 159074 18333972 ~ 18351769 (+)
G190662 NA non-coding upstream 93490 17974531 ~ 18071646 (+)
G190669 NA non-coding upstream 104388 18059985 ~ 18060748 (+)
G190667 NA non-coding upstream 109687 18042651 ~ 18055449 (+)
G190659 NA non-coding upstream 177459 17963685 ~ 17987677 (+)
G190636 med20,LOC102787816 non-coding upstream 328727 17831881 ~ 17836409 (+)
G190679 NA non-coding downstream 18670 18193568 ~ 18285804 (+)
G190694 atad3a,atad3 non-coding downstream 25119 18200017 ~ 18203726 (+)
G190697 NA non-coding downstream 35149 18210047 ~ 18257812 (+)
G190721 NA non-coding downstream 128352 18303250 ~ 18307270 (+)
G190683 NA non-coding downstream 134221 18309119 ~ 18310830 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other upstream 123627 18022252 ~ 18041509 (+)
cdkn1a NA other upstream 367834 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 651827 17508390 ~ 17513309 (+)
G190550 NA other upstream 671954 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 718395 17434362 ~ 17446741 (+)
tmem43 NA other downstream 295699 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 377956 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 523699 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 930591 19105489 ~ 19206958 (+)
G191211 NA other downstream 1194336 19369234 ~ 19374361 (+)

Expression


Co-expression Network