fbxo42 (fbxo42)


Basic Information

Item Value
gene id fbxo42
gene name fbxo42
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18314479 ~ 18333043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256687.3
CCTAAAAGATATTGTCTAACTTACACTGGAAACTAAAAGCTACAACTGAActgtccattccaccttaaattcagtgcaaGACTATTGCACTGATTAAGGTGGAACTATTAATTCGAGCGAGAAGCAAAAACTTCCTGAAGCTAAAGCGGTTTAATATCGGAGTTAAGACAGCGCACCGGTGACGCGTCCGGCCGATGACGCATCGCCAGTGTCGTCCTGCGTGCGCGCCTCCGCCTCCACCTCCTGTTGTGTGCGTGCGCGCGCCCGCTGGGTGAAGATGGCGGAGCGGGATAGCAGGAGCTGATAAAGGAGCGCTGCGGAGAGAGCGGAGAAAAACACGGAGAACCGGAGGACCCACACCGCACGGCAGCATGTCCCGGTCCTCCGACAGCGAGGATGGCTGCTTCGTTGACATGGACACAGAGGACAGTGGGGTCACACTAGCGGGTCACGCCGAGGACCAGGCTGTGGAGATGAAATCGGGCAGCGTCACCGGAGAGATAAGCGCAGACGGCGAGCAGCACCTCGGGAGAGGCAGCCAGAGAGCCATGGCTGAGCTGCCAGAGGAGGTTCTGGAGTACATCCTGTCTTTCCTTTCCCCATATCAGGAGCACAAGACTGCTGCCCTGGTGTGCAAACTGTGGTATCGCCTCATCAAAGGTGTAGCATATCAGTGTTACCACGGTTTCCTGAGAGCCGTGCAGGAAGGAAACATCCAGTGGGAGAGTCGCACCTACCCGTATCCAGGGACGCCCATCACCCAGCGCTTCTCACACAgtgcgTGCTATTACGATTCCAACCagtctatgtatgtgtttggcGGCTGCACTCAAAGCAGCTGTAACGCGGCTTTTAATGACCTGTGGAGGCTCGATCTGAACAGCAAGGAGTGGATTCGACCACTGGCTTCAGgaTCTTACCCCTCCCCTAAAGCCGGAGCAACGTTAGTCATGTACAAAGACCTGCTGGTGCTGTTCGGCGGCTGGACCCGGCCCAGCCCGTACCCCCTGCATCAGCCCGAGCGGTTCTTCGACGAGATCCACACCTACTCGCCCTCCAAAAACTgGTGGAACTGCATCGTAACCACTCATGGTCCTCCCCCTATGGCTGGCCACTCCTCCTCTGTCATTAACAACAACATGATTGTGTTCGGAGGCTCTCTCGGAGCTCGCCAAATGAGTAATGAAGTATGGGTATTGGATTTAGAACAGTGGTCCTGGTCTAAACCCACAATTAAAGGCCCGTCCCCTCACCCCCGCGGAGGCCAATCACAGATTGTTATAGATGATGATACGCTGCTTATTCTGGGAGGCTGCGGAGGTCCTAATGCGctgctgaaggATGCCTGGCTGCTGCACATGGGCGCCCCCACATGGTCATGGCAGCAACTGAGAGTAGAGAATGAAGAGCATGGAGCTCCAGAGCTGTGGTGCCACCCAGCCTGCAGGgttggtcagtgtgtggtggtCTTCTCTCAGGCCCCCTCAGGTCGAGCCCCTCTGAGCCCGAGCCTTAACTCACGCCCCTCTCCGATCAGTGCCACCCCCGCCCCCCTGGGCCCGGACCCTCCCTCCCTGCGCTCGCAGTCTCCGGTCCGCAGCGGCAGTAGCGGAGCTGCCGCCCTGGTGCTGGGCTCCGCCGAGGAGGCGCCCTGCGTCAACGGCCGCTGGGGGACTCTTCGACCACGCCCACGGGGCGGAGTCAGAGACGGaagcccctcctcctcctcctcctcccagcAGCCGTCTCCGTTACAGGCCCCGGACAGCCCCCCTCTCCCTCCCCTGCTGAACGGCTCCTCCCCCTCCCCTCGCACAAGCCCCTCCCAGGCTGCGTCTCCGCCCTCCAGGCTGCACGGGAACGCCCACTTACCTACAGACTACGGCTGGGAGTCCCCGCCcccttcttcttcatcttctttatCATCATCCTCTGCGATTCCTTTCGACCATCCGAGCACAAACGGGCTGCACACACCTCCCCGAACTCCACCCGGAGCCGTCTCTCCCGCTGCTCTCCGCAGAGGCCTCGAAGCCGTCAAAGccctttcctcctcctcttcatcaccatcatcttcctcctcatcctccctcccatcctcctcatcctctctAGCCCAGCCTGGTGGAAACGCCGCCTTAAAAGCCCTCTCTTCCTCCTGTCCGCTGTCGTCTTcgccctcctcttcctcagcaGCCCAGCCTGGAGCAAGCTCCACCCCCAGCAGCACTCCTCCCGCCCCCTCGTCCTCCTCCAGCCCTCCTTCGCAGGCCGCAGCCGCTGACGGACATTCCATTCCACCAATAGCGCGCCGCCTCGGCCACCACCCGCCCCAGAGCCTCAACGTGGGCAAGCCGCTCTACCAGTCGCTCAACTGCAAGCCCATGCAGATGTACGTTCTGGACATTTCCCGCGCCAAAACGGACGCCGTGGTCTCCTGGAGGGTTTACGGAAGCGGCGGGGCCCCCAGCGCCGTCACCGGGCCCCCGGAAACCAGCCTGCACACCGTGGTCCAGGGCCGCGGCGAGCTGATCATCTTCGGGGGCTTGATGGACAAAAAGCAGAACGTAAAGTACTACCCCAAAACCAACGCCTTGTACTTTGTGCGTGCTAAAAGGTAGTGAGCTTCAGCCGAGCGGAACGAGCACAGTGTGAGCAGTAGCCTATGAACTGGCCATCCTTTCGGACGGACCCTGCGCTCTGGCCTACCGAACATGACCTGCCTTCAGCTGGGGAGCGAAACGAagcgaggagagagagagagagagagagagagagagaagaggatacaagacaaaaaaaaaaaagttttgctaACGTCTGTCGTTCGCCTCTTTCCCGACACTAAGCTCCTCCTCCGCTCTCCCAGTTTGCGTAACTATGGTTAACtaaggaaataaacatttcaaCACATTTAAAGGACACTCGTTTGGTGTTGTATGACTGACATACCTGACCTTGGCTCcctgtgtgtgctggtgtgtctgtaattgattgtgtgtgtgtgtgtgtgtatgattgattgattgattgattgattgtgtgtgtgattgtgtgtgtttgaggtggGAGGAGAGAAAATGAAGGGAACGTTTCTCAGTTTCTTGTGCATCGTCCAAGGAAGCGCCCAGGAAACGGAGCAGCGGACAACTACCTTGCTTTTATATCTCACTTCCTGCCTGCattgtttacagtgtgtgtgcgtgtgtgtgagacagacaTAATGTGATGCATGTGTCTGTGATTGAagtgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtggttgatgTTTGGGAAGGGATTTGAAGGGTATGGTCTATTGCAGTGTACTCTAAACAAAGTAAAACAATAAAGGCCTCCATGTCTTAACTCTC
>XM_022682528.1
CCCTAAAAGATATTGTCTAACTTACACTGGAAACTAAAAGCTACAACTGAActgtccattccaccttaaattcagtgcaaGACTATTGCACTGATTAAGGTGGAACTATTAATTCGAGCGAGAAGCAAAAACTTCCTGAAGCTAAAGCGGTTTAATATCGGAGTTAAGACAGGCAGCATGTCCCGGTCCTCCGACAGCGAGGATGGCTGCTTCGTTGACATGGACACAGAGGACAGTGGGGTCACACTAGCGGGTCACGCCGAGGACCAGGCTGTGGAGATGAAATCGGGCAGCGTCACCGGAGAGATAAGCGCAGACGGCGAGCAGCACCTCGGGAGAGGCAGCCAGAGAGCCATGGCTGAGCTGCCAGAGGAGGTTCTGGAGTACATCCTGTCTTTCCTTTCCCCATATCAGGAGCACAAGACTGCTGCCCTGGTGTGCAAACTGTGGTATCGCCTCATCAAAGGTGTAGCATATCAGTGTTACCACGGTTTCCTGAGAGCCGTGCAGGAAGGAAACATCCAGTGGGAGAGTCGCACCTACCCGTATCCAGGGACGCCCATCACCCAGCGCTTCTCACACAgtgcgTGCTATTACGATTCCAACCagtctatgtatgtgtttggcGGCTGCACTCAAAGCAGCTGTAACGCGGCTTTTAATGACCTGTGGAGGCTCGATCTGAACAGCAAGGAGTGGATTCGACCACTGGCTTCAGgaTCTTACCCCTCCCCTAAAGCCGGAGCAACGTTAGTCATGTACAAAGACCTGCTGGTGCTGTTCGGCGGCTGGACCCGGCCCAGCCCGTACCCCCTGCATCAGCCCGAGCGGTTCTTCGACGAGATCCACACCTACTCGCCCTCCAAAAACTgGTGGAACTGCATCGTAACCACTCATGGTCCTCCCCCTATGGCTGGCCACTCCTCCTCTGTCATTAACAACAACATGATTGTGTTCGGAGGCTCTCTCGGAGCTCGCCAAATGAGTAATGAAGTATGGGTATTGGATTTAGAACAGTGGTCCTGGTCTAAACCCACAATTAAAGGCCCGTCCCCTCACCCCCGCGGAGGCCAATCACAGATTGTTATAGATGATGATACGCTGCTTATTCTGGGAGGCTGCGGAGGTCCTAATGCGctgctgaaggATGCCTGGCTGCTGCACATGGGCGCCCCCACATGGTCATGGCAGCAACTGAGAGTAGAGAATGAAGAGCATGGAGCTCCAGAGCTGTGGTGCCACCCAGCCTGCAGGgttggtcagtgtgtggtggtCTTCTCTCAGGCCCCCTCAGGTCGAGCCCCTCTGAGCCCGAGCCTTAACTCACGCCCCTCTCCGATCAGTGCCACCCCCGCCCCCCTGGGCCCGGACCCTCCCTCCCTGCGCTCGCAGTCTCCGGTCCGCAGCGGCAGTAGCGGAGCTGCCGCCCTGGTGCTGGGCTCCGCCGAGGAGGCGCCCTGCGTCAACGGCCGCTGGGGGACTCTTCGACCACGCCCACGGGGCGGAGTCAGAGACGGaagcccctcctcctcctcctcctcccagcAGCCGTCTCCGTTACAGGCCCCGGACAGCCCCCCTCTCCCTCCCCTGCTGAACGGCTCCTCCCCCTCCCCTCGCACAAGCCCCTCCCAGGCTGCGTCTCCGCCCTCCAGGCTGCACGGGAACGCCCACTTACCTACAGACTACGGCTGGGAGTCCCCGCCcccttcttcttcatcttctttatCATCATCCTCTGCGATTCCTTTCGACCATCCGAGCACAAACGGGCTGCACACACCTCCCCGAACTCCACCCGGAGCCGTCTCTCCCGCTGCTCTCCGCAGAGGCCTCGAAGCCGTCAAAGccctttcctcctcctcttcatcaccatcatcttcctcctcatcctccctcccatcctcctcatcctctctAGCCCAGCCTGGTGGAAACGCCGCCTTAAAAGCCCTCTCTTCCTCCTGTCCGCTGTCGTCTTcgccctcctcttcctcagcaGCCCAGCCTGGAGCAAGCTCCACCCCCAGCAGCACTCCTCCCGCCCCCTCGTCCTCCTCCAGCCCTCCTTCGCAGGCCGCAGCCGCTGACGGACATTCCATTCCACCAATAGCGCGCCGCCTCGGCCACCACCCGCCCCAGAGCCTCAACGTGGGCAAGCCGCTCTACCAGTCGCTCAACTGCAAGCCCATGCAGATGTACGTTCTGGACATTTCCCGCGCCAAAACGGACGCCGTGGTCTCCTGGAGGGTTTACGGAAGCGGCGGGGCCCCCAGCGCCGTCACCGGGCCCCCGGAAACCAGCCTGCACACCGTGGTCCAGGGCCGCGGCGAGCTGATCATCTTCGGGGGCTTGATGGACAAAAAGCAGAACGTAAAGTACTACCCCAAAACCAACGCCTTGTACTTTGTGCGTGCTAAAAGGTAGTGAGCTTCAGCCGAGCGGAACGAGCACAGTGTGAGCAGTAGCCTATGAACTGGCCATCCTTTCGGACGGACCCTGCGCTCTGGCCTACCGAACATGACCTGCCTTCAGCTGGGGAGCGAAACGAagcgaggagagagagagagagagagagagagagagaagaggatacaagacaaaaaaaaaaaagttttgctaACGTCTGTCGTTCGCCTCTTTCCCGACACTAAGCTCCTCCTCCGCTCTCCCAGTTTGCGTAACTATGGTTAACtaaggaaataaacatttcaaCACATTTAAAGGACACTCGTTTGGTGTTGTATGACTGACATACCTGACCTTGGCTCcctgtgtgtgctggtgtgtctgtaattgattgtgtgtgtgtgtgtgtgtatgattgattgattgattgattgattgtgtgtgtgattgtgtgtgtttgaggtggGAGGAGAGAAAATGAAGGGAACGTTTCTCAGTTTCTTGTGCATCGTCCAAGGAAGCGCCCAGGAAACGGAGCAGCGGACAACTACCTTGCTTTTATATCTCACTTCCTGCCTGCattgtttacagtgtgtgtgcgtgtgtgtgagacagacaTAATGTGATGCATGTGTCTGTGATTGAagtgagaagtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtggttgatgTTTGGGAAGGGATTTGAAGGGTATGGTCTATTGCAGTGTACTCTAAACAAAGTAAAACAATAAAGGCCTCCATGTCTTAACTCTC

Function

symbol description
fbxo42 Orthologous to human FBXO42 (F-box protein 42).

NR:

description
F-box only protein 42-like

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256687.3 True 3390 mRNA 0.57 11 18314480 18333043
XM_022682528.1 False 3196 mRNA 0.56 10 18314479 18333043

Neighbor

gene id symbol gene type direction distance location
mfap2 mfap2 coding upstream 71535 18231228 ~ 18242944 (+)
sdhb sdhb,LOC103130297,LOC105927147,LOC107591143,LOC106929635,LOC107085616 coding upstream 84956 18218259 ~ 18229523 (+)
tmem240 tmem240,LOC103042738 coding upstream 127621 18180426 ~ 18186858 (+)
ssu72 ssu72,ssu72l,LOC107690546 coding upstream 139581 18165136 ~ 18174898 (+)
fndc10 fndc10 coding upstream 153433 18156029 ~ 18161046 (+)
LOC103030694 slc25a34 coding downstream 929 18333972 ~ 18351769 (+)
fblim1 fblim1,LOC107719030 coding downstream 29236 18362279 ~ 18378266 (+)
LOC103039842 wu:fb69f10,LOC108414948,LOC108254705,LOC107719036,LOC107573135 coding downstream 47022 18380065 ~ 18401199 (+)
ndufaf3 ndufaf3 coding downstream 118619 18451662 ~ 18455660 (+)
LOC103029126 NA coding downstream 165392 18498435 ~ 18504362 (+)
G190683 NA non-coding upstream 3649 18309119 ~ 18310830 (+)
G190721 NA non-coding upstream 7209 18303250 ~ 18307270 (+)
G190679 NA non-coding upstream 28675 18193568 ~ 18285804 (+)
G190697 NA non-coding upstream 56667 18210047 ~ 18257812 (+)
G190694 atad3a,atad3 non-coding upstream 110753 18200017 ~ 18203726 (+)
G190725 NA non-coding downstream 37414 18370457 ~ 18479972 (+)
G190731 NA non-coding downstream 93934 18426977 ~ 18428710 (+)
G190743 LOC108254710,LOC108444098,LOC103385834 non-coding downstream 150367 18483410 ~ 18488561 (+)
G190745 NA non-coding downstream 160467 18493510 ~ 18547374 (+)
LOC111195397 LOC108261437,LOC108254800,LOC108444092,LOC108261508,LOC106527107 non-coding downstream 365543 18698586 ~ 18699226 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other upstream 272970 18022252 ~ 18041509 (+)
cdkn1a NA other upstream 517177 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 801170 17508390 ~ 17513309 (+)
G190550 NA other upstream 821297 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 867738 17434362 ~ 17446741 (+)
tmem43 NA other downstream 137554 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 219811 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 365554 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 772446 19105489 ~ 19206958 (+)
G191211 NA other downstream 1036191 19369234 ~ 19374361 (+)

Expression


Co-expression Network