G190731


Basic Information

Item Value
gene id G190731
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18426977 ~ 18428710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258623
CTCCTTGGCGAGGGTCTTTTTACAGCAGTCAAAAGTTCCGGCATAGAGAGGAGTCTGACCCGGTCCTGGCTTCGGTTGAGTCTGGAGTCTCACCTTGATTGTATCCAGTGGATGTCCAGCAAACACCAGACACACACCTCCAAACCCGCCGGCGAAGAAGTTCTTCACAGGGCTGATGGGCTGCGGCTGCTTCGACATGTTTATGGGATCTTGTGGAGGACAGGAGGAGGTTTAGGAGGTGTTCACGAGAGGATTAGTGggtaaataaacagataaagcGGAGTTTACAGCTGGAAAGGACAGACCTGCTGTTCCTGTTACCGATCAGGGGACCTTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258623 True 340 lncRNA 0.52 2 18426977 18428710

Neighbor

gene id symbol gene type direction distance location
LOC103039842 wu:fb69f10,LOC108414948,LOC108254705,LOC107719036,LOC107573135 coding upstream 25778 18380065 ~ 18401199 (+)
fblim1 fblim1,LOC107719030 coding upstream 48711 18362279 ~ 18378266 (+)
LOC103030694 slc25a34 coding upstream 75208 18333972 ~ 18351769 (+)
fbxo42 fbxo42 coding upstream 93934 18314479 ~ 18333043 (+)
mfap2 mfap2 coding upstream 184033 18231228 ~ 18242944 (+)
ndufaf3 ndufaf3 coding downstream 22952 18451662 ~ 18455660 (+)
LOC103029126 NA coding downstream 69725 18498435 ~ 18504362 (+)
LOC103036502 wu:fd14a01,LOC108444092,LOC108254796,LOC108444093,LOC108443907,LOC108443910 coding downstream 253446 18682156 ~ 18752035 (+)
plekha8 NA coding downstream 254981 18683691 ~ 18696307 (+)
LOC111195396 myhb,LOC108444092,LOC108444093,LOC108443910 coding downstream 292528 18721238 ~ 18723102 (+)
G190683 NA non-coding upstream 116147 18309119 ~ 18310830 (+)
G190721 NA non-coding upstream 119707 18303250 ~ 18307270 (+)
G190679 NA non-coding upstream 141173 18193568 ~ 18285804 (+)
G190743 LOC108254710,LOC108444098,LOC103385834 non-coding downstream 54700 18483410 ~ 18488561 (+)
G190745 NA non-coding downstream 64800 18493510 ~ 18547374 (+)
LOC111195397 LOC108261437,LOC108254800,LOC108444092,LOC108261508,LOC106527107 non-coding downstream 269876 18698586 ~ 18699226 (+)
G191107 NA non-coding downstream 380508 18809218 ~ 18879333 (+)
G191118 acy1,LOC107575257,LOC107747934,LOC107752189 non-coding downstream 426574 18855284 ~ 18861232 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other upstream 385468 18022252 ~ 18041509 (+)
cdkn1a NA other upstream 629675 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 913668 17508390 ~ 17513309 (+)
G190550 NA other upstream 933795 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 980236 17434362 ~ 17446741 (+)
tmem43 NA other downstream 41887 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 124144 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 269887 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 676779 19105489 ~ 19206958 (+)
G191211 NA other downstream 940524 19369234 ~ 19374361 (+)

Expression


Co-expression Network