G190667


Basic Information

Item Value
gene id G190667
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 18042651 ~ 18055449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU258523
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgagtgtgtgtgtatgaggatgtttattgaataaacagtttgacaGAAAAGTTGtgtctaactctctctcttttaataaGCGATAggatataagtgtgtgtgtgtgtgtgtgttggagaaaCTGTCTTGTATggaatgtatgtgtgtttaaattactGTGCCATGCTGTGC
>TU258524
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgagtgtgtgtgtatgaggatgtttattgaataaacagtttgacaGAAAAGTTGtgtctaactctctctcttttaataaGCGATAggatataagtgtgtgtgtgtgtgtgtgttggagaaaCTGTCTTGTATggaatgtatgtgtgtttaaattactGTGCCATGCTGTGC
>TU258525
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgaGtgagtgtgta
>TU258526
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgagtgtgtgtgtatgaggatgtttattgaataaacagtttgacaGAAAAGTTGtgtctaactctctctcttttaataaGCGATAggatataagtgtgtgtgtgtgtgtgtgttggagaaaCTGTCTTGTATggaatgtatgtgtgtttaaattactGTGCCATGCTGTGC
>TU258527
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgaGtgagtgtgta
>TU258529
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgaGtgagtgtgta
>TU258531
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258532
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtttgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258533
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258534
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgagtgtgtgtgtatgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258535
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258536
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaaggatcAGTAGGAGAACGCTGCCTCTGCGTTTCAGTTTCTTCTGTCTCCTGCTGTGTATAttcgtgtgtgtttgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
>TU258537
GTTCAGCAGGCAGCGGTAATCATGGAGGACTCCGGACGCAAGTGGGACCGGTGTGTGTCGGACAGCGCGGTCAAGACAGtgttggGGTTGGGGGTTGGCGCTCTCTTCTCTGTTCTGTTCTTCAAGCgacgCTCATGGCCTATAGCGTTTGGAGCAGGGATGGGGTTGGGCATGGCGTACTCCAACTGCCAACACGACTTTAAATCCCCATATCTACTACACGGACACATGGTgaagg

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0070469 respirasome cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU258523 True 476 lncRNA 0.48 4 18042651 18054206
TU258524 False 476 lncRNA 0.48 4 18042651 18054206
TU258525 False 319 lncRNA 0.54 5 18042651 18055449
TU258526 False 476 lncRNA 0.48 4 18042651 18054206
TU258527 False 319 lncRNA 0.54 5 18042651 18055449
TU258529 False 319 lncRNA 0.54 5 18042651 18055449
TU258531 False 348 lncRNA 0.53 5 18042651 18054333
TU258532 False 354 lncRNA 0.53 5 18042651 18054333
TU258533 False 348 lncRNA 0.53 5 18042651 18054333
TU258534 False 368 lncRNA 0.53 5 18042651 18054333
TU258535 False 348 lncRNA 0.53 5 18042651 18054333
TU258536 False 354 lncRNA 0.53 5 18042651 18054333
TU258537 False 238 lncRNA 0.56 3 18042651 18051514

Neighbor

gene id symbol gene type direction distance location
dstyk dstyk coding upstream 113994 17883060 ~ 17928657 (+)
ccnd3 NA coding upstream 187684 17848593 ~ 17854967 (+)
bysl bysl,LOC102787510 coding upstream 196274 17837190 ~ 17846377 (+)
LOC103033239 tmcc2,LOC107569750,LOC107690538,LOC107656904 coding upstream 241147 17797601 ~ 17801504 (+)
srsf3 srsf3,srsf3b,LOC108413700,LOC107569752,LOC107690536 coding upstream 275788 17755944 ~ 17766863 (+)
nbl1 nbl1,LOC108415674,LOC106583098 coding downstream 2061 18057510 ~ 18068394 (+)
tmem88b LOC108415445 coding downstream 24771 18080220 ~ 18092648 (+)
vwa1 NA coding downstream 70009 18125458 ~ 18141915 (+)
fndc10 fndc10 coding downstream 100580 18156029 ~ 18161046 (+)
ssu72 ssu72,ssu72l,LOC107690546 coding downstream 109687 18165136 ~ 18174898 (+)
G190659 NA non-coding upstream 54974 17963685 ~ 17987677 (+)
G190636 med20,LOC102787816 non-coding upstream 206242 17831881 ~ 17836409 (+)
G190613 NA non-coding upstream 325818 17691046 ~ 17716833 (+)
G190600 NA non-coding upstream 340820 17664233 ~ 17701831 (+)
G190568 NA non-coding upstream 388665 17645844 ~ 17653986 (+)
G190669 NA non-coding downstream 4536 18059985 ~ 18060748 (+)
G190693 NA non-coding downstream 99956 18155405 ~ 18172697 (+)
G190679 NA non-coding downstream 138119 18193568 ~ 18285804 (+)
G190694 atad3a,atad3 non-coding downstream 144568 18200017 ~ 18203726 (+)
G190697 NA non-coding downstream 154598 18210047 ~ 18257812 (+)
G190661 capzb,LOC105897928,LOC106565651,LOC106583096 other upstream 1142 18022252 ~ 18041509 (+)
cdkn1a NA other upstream 245349 17688517 ~ 17797302 (+)
LOC103024479 LOC108413015 other upstream 529342 17508390 ~ 17513309 (+)
G190550 NA other upstream 549469 17483820 ~ 17493182 (+)
cept1 cept1,LOC103025726,LOC108413012 other upstream 595910 17434362 ~ 17446741 (+)
tmem43 NA other downstream 415148 18470597 ~ 18482916 (+)
LOC103030382 LOC108444095 other downstream 497405 18552854 ~ 18672404 (+)
G191033 myhb,LOC108261437,LOC108444092,LOC108261508,LOC108254800,LOC106527107,LOC108443907,LOC108443910,LOC108444093 other downstream 643148 18698597 ~ 18722747 (+)
LOC103037762 erc2,LOC108414413,LOC107694874 other downstream 1050040 19105489 ~ 19206958 (+)
G191211 NA other downstream 1313785 19369234 ~ 19374361 (+)

Expression


Co-expression Network